Salmonella enterica subsp. enterica serovar Agona 63.H.87 |
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Putative Salmonella enterica subsp. enterica serovar Agona 63.H.87 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,841,487 bp
GenBank #: CARL00000000 (NZ_CARL00000000)
REBASE acronym: Sen63H87
Org_num: 16185
All begin SA63_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1727 | protein TIR | |||
| 1728 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen63H87ORF1728P |
| 1729 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen63H87ORF1728P |
| 1730 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen63H87ORF1728P |
| 1731 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen63H87ORF1728P |
| 1732 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 324 | protein YubE | |||
| 325 | M | M.SspPIBORF23080P (100% identity) | M.Sen63H87ORF325P | |
| 326 | YccB | |||
| 4692 | 97 aa hypothetical protein | |||
| 4693 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen63H87ORF4693P |
| 4694 | ATPase | |||
| 3524 | metal dependent phosphohydrolase | |||
| 3525 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen63H87DcmP |
| 3526 | V | V.StyUK1DcmP (100% identity) | V.Sen63H87DcmP | |
| 3527 | carboxylate/amino acid/amine transporter | |||
| 4699 | ribulose-phosphate 3-epimerase | |||
| 4700 | M | M.StyTDamP (100% identity) | GATC | M.Sen63H87DamP |
| 4701 | protein DamX | |||
| 2562 | periplasmic protein | |||
| 2563 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen63H87ORF2563P |
| 2564 | DNA-binding protein Fis | |||
| 3876 | Crossover junction endodeoxyribonuclease rusA | |||
| ??? | M | M.Sen71971ORF13085P (100% identity) | GATC | M.Sen63H87ORF3877P |
| 3878 | Protein NinB | |||
| 63 | DksA/TraR family C4-type zinc finger protein | |||
| 64 | M | M.SenSA5ORF21849P (100% identity) | GATC | M.Sen63H87ORF64P |
| 65 | bacteriophage replication gene A | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1157 | cyanide-insensitive oxidase CioA | |||
| 1158 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen63H87ORF1159P |
| 1159 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen63H87ORF1159P |
| 1160 | major facilitator superfamily MFS_1 | |||