Salmonella enterica subsp. enterica serovar Agona 65.H.72 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Agona 65.H.72 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,828,995 bp
GenBank #: CARJ00000000 (NZ_CARJ00000000)
REBASE acronym: Sen65H72
Org_num: 16183
All begin SA65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3833 | protein TIR | |||
| 3834 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen65H72ORF3834P |
| 3835 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen65H72ORF3834P |
| 3836 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen65H72ORF3834P |
| 3837 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen65H72ORF3834P |
| 3838 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3817 | 97 aa hypothetical protein | |||
| 3818 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen65H72ORF3818P |
| 3819 | 670 aa hypothetical protein | |||
| 3675 | ribulose-phosphate 3-epimerase | |||
| 3676 | M | M.StyTDamP (100% identity) | GATC | M.Sen65H72DamP |
| 3677 | protein DamX | |||
| 1756 | periplasmic protein | |||
| 1757 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen65H72ORF1757P |
| 1758 | DNA-binding protein Fis | |||
| 177 | DksA/TraR family C4-type zinc finger protein | |||
| 178 | M | M.SenSA5ORF21849P (100% identity) | GATC | M.Sen65H72ORF178P |
| 179 | bacteriophage replication gene A | |||
| 1361 | carboxylate/amino acid/amine transporter | |||
| 1362 | V | V.StyUK1DcmP (100% identity) | V.Sen65H72DcmP | |
| 1363 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen65H72DcmP |
| 1364 | metal dependent phosphohydrolase | |||
| 485 | PfkB domain protein | |||
| 486 | S | S.Sen57ORFAP (100% identity) | S.Sen65H72ORF487P | |
| 487 | RM | Sen57ORFAP (100% identity) | Sen65H72ORF487P | |
| 488 | 311 aa Hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2713 | cyanide-insensitive oxidase CioA | |||
| 2714 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen65H72ORF2715P |
| 2715 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen65H72ORF2715P |
| 2716 | major facilitator superfamily MFS_1 | |||