Salmonella enterica subsp. enterica serovar Agona 68.U.05 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Agona 68.U.05 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,756,135 bp
GenBank #: CARG00000000 (NZ_CARG00000000)
REBASE acronym: Sen68U05
Org_num: 16181
All begin SA68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3720 | protein TIR | |||
| 3721 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen68U05ORF3721P |
| 3722 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen68U05ORF3721P |
| 3723 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen68U05ORF3721P |
| 3724 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen68U05ORF3721P |
| 3725 | filamentation induced by cAMP protein Fic | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3704 | 97 aa hypothetical protein | |||
| 3705 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen68U05ORF3705P |
| 3706 | 670 aa hypothetical protein | |||
| 1977 | metal dependent phosphohydrolase | |||
| 1978 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen68U05DcmP |
| 1979 | V | V.StyUK1DcmP (100% identity) | V.Sen68U05DcmP | |
| 1980 | carboxylate/amino acid/amine transporter | |||
| 4655 | ribulose-phosphate 3-epimerase | |||
| 4656 | M | M.StyTDamP (100% identity) | GATC | M.Sen68U05DamP |
| 4657 | protein DamX | |||
| 2344 | periplasmic protein | |||
| 2345 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen68U05ORF2345P |
| 2346 | DNA-binding protein Fis | |||
| 1243 | DksA/TraR family C4-type zinc finger protein | |||
| 1244 | M | M.SenSA5ORF21849P (100% identity) | GATC | M.Sen68U05ORF1244P |
| 1245 | bacteriophage replication gene A | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 684 | major facilitator superfamily MFS_1 | |||
| 685 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen68U05ORF685P |
| 686 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen68U05ORF685P |
| 687 | cyanide-insensitive oxidase CioA | |||