Salmonella enterica subsp. enterica serovar Agona 71.E.05 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Agona 71.E.05 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,725,364 bp
GenBank #: CARD00000000 (NZ_CARD00000000)
REBASE acronym: Sen71E05
Org_num: 16179
All begin SA71_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3844 | filamentation induced by cAMP protein Fic | |||
| 3845 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen71E05ORF3847P |
| 3846 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen71E05ORF3847P |
| 3847 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen71E05ORF3847P |
| 3848 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen71E05ORF3847P |
| 3849 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4646 | DksA/TraR family C4-type zinc finger protein | |||
| 4647 | M | M.Sen72A52ORF1532P (100% identity) | GATC | M.Sen71E05ORF4647P |
| 4648 | Methyltransferase, putative | |||
| 4647 | retron EC67 DNA adenine methylase | |||
| 4648 | M | M.Sen72A52ORF1531P (100% identity) | M.Sen71E05ORF4648P | |
| 4649 | bacteriophage replication gene A | |||
| 1927 | metal dependent phosphohydrolase | |||
| 1928 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen71E05DcmP |
| 1929 | V | V.StyUK1DcmP (100% identity) | V.Sen71E05DcmP | |
| 1930 | carboxylate/amino acid/amine transporter | |||
| 2390 | periplasmic protein | |||
| 2391 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen71E05ORF2391P |
| 2392 | DNA-binding protein Fis | |||
| 4604 | protein DamX | |||
| 4605 | M | M.StyTDamP (100% identity) | GATC | M.Sen71E05DamP |
| 4606 | ribulose-phosphate 3-epimerase | |||
| 3863 | 670 aa hypothetical protein | |||
| 3864 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen71E05ORF3864P |
| 3865 | 97 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 702 | major facilitator superfamily MFS_1 | |||
| 703 | M | M.Sen72A52ORF2927P (100% identity) | CAGAG | M.Sen71E05ORF703P |
| 704 | R | SenWORF340P (100% identity) | CAGAG | Sen71E05ORF703P |
| 705 | cyanide-insensitive oxidase CioA | |||