Escherichia coli D2-2 |
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Putative Escherichia coli D2-2 RM systems
Ref: Olsen,R.H. et al. Genome Announc 3 (3) (2015)
REBASE ref # 19688
Contig set: 5,681,572 bp
GenBank #: JYEF00000000 (NZ_JYEF00000000)
REBASE acronym: EcoD22
Org_num: 15883
All begin UC41_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 27710 | M | M.EcoLR31ORF17520P (100% identity) | M.EcoD22ORF27710P | |
| 27715 | S | S.EcoLR31ORF17520P (100% identity) | S.EcoD22ORF27710P | |
| 27720 | membrane protein | |||
| 27725 | R | EcoLR31ORF17520P (100% identity) | EcoD22ORF27710P | |
| 27730 | 62 aa hypothetical protein | |||
| 20995 | pseudogene | |||
| 21000 | M | M.EcoFu019ORF24015P (100% identity) | M.EcoD22ORF21000P | |
| 21005 | S | S.EcoFu019ORF24015P (99% identity) | S.EcoD22ORF21000P | |
| 21010 | chromosome segregation protein SMC | |||
| 15870 | 550 aa hypothetical protein | |||
| 15875 | R | EcoZ151ORF20685P (99% identity) | EcoD22ORF15880P | |
| 15880 | M | M.SspS13ORF3945P (100% identity) | M.EcoD22ORF15880P | |
| 15885 | S | S.EcoUM1886ORF23420P (99% identity) | S.EcoD22ORF15880P | |
| 15890 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 28200 | M | methylase | M.EcoD22ORF28200P | |
| 28205 | 73 aa hypothetical protein | |||
| 27910 | holin | |||
| 27915 | M | M.EcoB8S56ORF28800P (99% identity) | M.EcoD22ORF27915P | |
| 27920 | TrmB family transcriptional regulator | |||
| 26640 | plasmid maintenance protein CcdB | |||
| 26645 | M | M.SenH18ORF28321P (100% identity) | GAATTC | M.EcoD22ORF26645P |
| 26650 | HNH endonuclease | |||
| 10265 | Fis family transcriptional regulator | |||
| 10270 | M | M.Sdy12039ORFBP (99% identity) | ATGCAT | M.EcoD22ORF10270P |
| 10275 | 59 aa hypothetical protein | |||
| 18670 | hydrolase, partial | |||
| 18675 | M | M.EcoS004DcmP (100% identity) | CCWGG | M.EcoD22DcmP |
| 18680 | V | V.EcoS004DcmP (100% identity) | V.EcoD22DcmP | |
| 18685 | multidrug DMT transporter | |||
| 8665 | cell division protein DamX | |||
| 8670 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoD22DamP |
| 8675 | ribulose-phosphate 3-epimerase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 27410 | M | M.SenH18ORF28191P (100% identity) | M.EcoD22ORF27410P | |
| 27415 | R | EcoUM1886ORF4740P (100% identity) | EcoD22ORF27410P | |
| 27420 | 165 aa hypothetical protein | |||