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Putative Helicobacter pylori 499/02 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,666,733 bp
GenBank #: JTDG00000000 (NZ_JTDG00000000)
REBASE acronym: Hpy499
Org_num: 15068
All begin HPY499_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
6580 | membrane protein | |||
6585 | M | M.HpyME10ORF4190P (94% identity) | M.Hpy499ORF6585P | |
6590 | S | S.HpyC028XV (96% identity) | S.Hpy499ORF6585P | |
6595 | R | HpySP210ORF3940P (95% identity) | Hpy499ORF6585P | |
6600 | hydroxyethylthiazole kinase | |||
1535 | metal-dependent hydrolase | |||
1540 | R | HpySP414ORF7230P (94% identity) | Hpy499ORF1545P | |
1545 | M | M.HpySP305V (92% identity) | M.Hpy499ORF1545P | |
1550 | S | S.HpyPO12ORF7445P (97% identity) | S.Hpy499ORF1545P | |
1555 | FAD-dependent thymidylate synthase | |||
4290 | 104 aa hypothetical protein | |||
4295 | S | S.HpySP802ORF3910P (97% identity) | S.Hpy499ORF4295P | |
4300 | cadmium transporter | |||
3050 | polyphosphate kinase | |||
3060 | S | S.HpyDO10ORF2390P (98% identity) | S.Hpy499ORF3065P | |
3065 | M | M.HpyNY40ORF1068P (96% identity) | M.Hpy499ORF3065P | |
3070 | R | HpyJO3ORF2295P (92% identity) | Hpy499ORF3065P | |
3075 | 631 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1375 | RM | HpyH010ORF6645P (67% identity) | Hpy499ORF1375P | |
1380 | nicotinate-nucleotide pyrophosphorylase | |||
7430 | membrane protein | |||
7435 | M | M.HpyPO05V (97% identity) | ATTAAT | M.Hpy499ORF7435P |
7440 | glycosyltransferase 9 family protein | |||
3410 | pseudogene | |||
3415 | M | M.HpyPOR115ORF7670P (98% identity) | GAAGA | M.Hpy499ORF3415P |
3420 | elongation factor Ts | |||
5850 | 3-5 exonuclease | |||
5855 | M | M.Hpyfe62ORF3865P (100% identity) | CCNNGG | M.Hpy499ORF5855P |
5860 | R | HpyPOR115IVP (99% identity) | CCNNGG | Hpy499ORF5855P |
5865 | acetone carboxylase subunit gamma | |||
7445 | GTP-binding protein | |||
7450 | M | M.HpyU403II (98% identity) | ACNGT | M.Hpy499ORF7450P |
7455 | R | HpySP504IIP (99% identity) | ACNGT | Hpy499ORF7450P |
7460 | DNA methyltransferase | |||
7455 | restriction endonuclease | |||
7460 | M | M.HpyL002ORF2475P (99% identity) | ACGT | M.Hpy499ORF7460P |
7465 | R | HpyPO07ORF2420P (98% identity) | ACGT | Hpy499ORF7460P |
7470 | 71 aa hypothetical protein | |||
5955 | 144 aa hypothetical protein | |||
5960 | M | M.HpyPO107XV (97% identity) | GCGC | M.Hpy499ORF5960P |
5965 | flagellar biosynthesis anti-sigma factor FlgM | |||
4910 | peptidase S41 | |||
4915 | RM | pseudogene | Hpy499ORF4915P | |
590 | pseudogene | |||
595 | M | M.HpyR3cORF7075P (87% identity) | GATC | M.Hpy499ORF595P |
600 | alpha-1,2-fucosyltransferase | |||
2465 | methyltransferase | |||
2470 | M | M.HpyF020XIV (99% identity) | TCNNGA | M.Hpy499ORF2470P |
2475 | R | HpySWT07ORF5395P (98% identity) | TCNNGA | Hpy499ORF2470P |
2480 | Laminin subunit alpha-2 precursor | |||
7650 | DNA gyrase subunit B | |||
7655 | M | M.HpyPOR115VII (98% identity) | GTAC | M.Hpy499ORF7655P |
7660 | R | HpySP07XP (97% identity) | GTAC | Hpy499ORF7655P |
7665 | membrane protein | |||
7100 | membrane protein | |||
7105 | RM | HpyME12ORF3185P (89% identity) | Hpy499ORF7105P | |
7110 | glycerol-3-phosphate dehydrogenase | |||
6160 | N-acetylneuraminate synthase | |||
6165 | R | R2.HpyPE18ORF890P (97% identity) | Hpy499ORF6165P | |
7240 | ATP-dependent DNA helicase | |||
7245 | M | M.HpyPO13II (97% identity) | GTNNAC | M.Hpy499ORF7245P |
7250 | R | HpyGRE040VP (89% identity) | GTNNAC | Hpy499ORF7245P |
7255 | flagellar hook protein FlgE | |||
3800 | hydrolase | |||
3805 | M | M.HpyB140ORF1340P (98% identity) | CATG | M.Hpy499ORF3805P |
3810 | R | HpySP13IP (100% identity) | CATG | Hpy499ORF3805P |
3815 | pseudogene | |||
1625 | DEAD/DEAH box helicase | |||
1630 | RM | HpySP14ORF7190P (90% identity) | Hpy499ORF1630P | |
1635 | 173 aa hypothetical protein | |||
255 | chaperone protein ClpB | |||
260 | M | M.HpySP07VII (99% identity) | CCGG | M.Hpy499ORF260P |
265 | R | HpySP401ORF1660P (83% identity) | CCGG | Hpy499ORF260P |
270 | 204 aa hypothetical protein | |||
5355 | agmatine deiminase | |||
5360 | M | M1.HpyPOR115V (100% identity) | CCTC | M1.Hpy499ORF5360P |
5365 | M | M2.HpyPOR115VP (100% identity) | CCTC | M2.Hpy499ORF5360P |
5370 | restriction endonuclease Hin4II | |||
5365 | restriction endonuclease | |||
5370 | R | HpyPE18VP (99% identity) | CCTTC | Hpy499ORF5375P |
5375 | M | M.HpyH011VI (98% identity) | CCTTC | M.Hpy499ORF5375P |
5380 | proline:sodium symporter PutP | |||
270 | 204 aa hypothetical protein | |||
275 | M | M.HpyL035XI (98% identity) | TCGA | M.Hpy499ORF275P |
280 | exodeoxyribonuclease VII large subunit | |||
1715 | membrane protein | |||
1720 | R | HpyPE102IXP (97% identity) | CCATC | Hpy499ORF1725P |
1725 | M | M2.HpyPE16VI (93% identity) | CCATC | M2.Hpy499ORF1725P |
1730 | M | M1.HpySP111IV (100% identity) | CCATC | M1.Hpy499ORF1725P |
1735 | permease | |||
1860 | amidophosphoribosyltransferase | |||
1865 | RM | HpyPO102ORF7085P (98% identity) | Hpy499ORF1865P | |
1870 | S | S.Hpyfe82ORF290P (66% identity) | S.Hpy499ORF1865P | |
1875 | DNA polymerase I | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
8035 | R | HpyBR8ORF6710P (89% identity) | Hpy499ORF8040P | |
8040 | M | M.HpyCOL112ORF6845P (95% identity) | M.Hpy499ORF8040P | |
8045 | endonuclease | |||
??? | M | M.HpySWT13ORF6370P (47% identity) | M.Hpy499ORF3410P | |
3415 | restriction endonuclease subunit M | |||
8095 | rod shape-determining protein MreC | |||
8100 | R | HpyPO13ORF6740P (93% identity) | Hpy499ORF8105P | |
8105 | M | M.HpyH025ORF1240P (41% identity) | M.Hpy499ORF8105P | |
1610 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyAL4ORF7175P (95% identity) | M.Hpy499ORF1615P | |
1625 | R | HpyDO5ORF7670P (94% identity) | Hpy499ORF1615P | |
1630 | restriction endonuclease |