Salmonella typhi CT18 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella typhi CT18 RM systems
Ref: Parkhill,J. et al. Nature 413 (6858), 848-852 (2001)
REBASE ref # 7039
| Sequence length: | GenBank #: | |
| Chromosome: | 4,809,037 bp | AL513382 (NC_003198) |
| plasmid pHCM1: | 218,160 bp | AL513383 (NC_003384) |
| plasmid pHCM2: | 106,516 bp | AL513384 (NC_003385) |
REBASE acronym: StyC
Org_num: 2268
All begin HCM1., HCM2., STY
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4880 | 131 aa conserved hypothetical protein | |||
| 4881 | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.StyCORF4883P |
| 4883 | M | M.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | M.StyCORF4883P |
| 4884 | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | StyCORF4883P |
| 4885 | mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1013 | bacteriophage protein | |||
| 1014 | M | M.StyTORF1926P (100% identity) | GATC | M.StyCORF1014P |
| 1015 | bacteriophage protein | |||
| 1025 | 174 aa conserved hypothetical bacteriophage protein | |||
| 1026 | M | M.StyTORF1914P (100% identity) | M.StyCORF1026P | |
| 1027 | 190 aa hypothetical bacteriophage protein | |||
| 2198 | membrane protein | |||
| 2199 | V | V.StyTDcmP (100% identity) | V.StyCDcmP | |
| 2200 | M | M.StyTDcmP (100% identity) | CCWGG | M.StyCDcmP |
| 2201 | 231 aa conserved hypothetical protein | |||
| 3565 | Fis DNA-binding protein | |||
| 3566 | M | M.StyUK1III (100% identity) | ATGCAT | M.StyCORF3566P |
| 3568 | exported protein | |||
| 3666 | 75 aa hypothetical protein | |||
| 3667 | M | M.StyTORF3409P (100% identity) | GATC | M.StyCORF3667P |
| 3668 | possible endonuclease | |||
| ??? | DamX protein | |||
| ??? | M | M.StyTDamP (100% identity) | GATC | M.StyCDamP |
| ??? | ribulose-phosphate 3-epimerase | |||
| 4635 | 804 aa conserved hypothetical protein | |||
| 4636 | M | M.StyTORF4329P (100% identity) | GATC | M.StyCORF4636P |
| 4637 | exonuclease | |||
| plasmid pHCM1 | ||||
| 58 | DNA-binding protein | |||
| 59 | M | M.Ype21801ORF197P (100% identity) | M.StyCORF59P | |
| 60 | 273 aa hypothetical protein | |||
| 186 | 56 aa hypothetical protein | |||
| 187 | M | M.Sfl29903ORFBP (100% identity) | CCWGG | M.StyCORF187P |
| 188 | nuclease | |||
| plasmid pHCM2 | ||||
| 111 | 76 aa hypothetical protein | |||
| 112 | M | M.SenTY585ORFIP (100% identity) | GATC | M.StyCORF112P |
| 113 | 308 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 387 | metabolite transport protein | |||
| ??? | M | M.StyTORF2507P (100% identity) | CAGAG | M.StyCORF388P |
| ??? | R | SenST0208ORFGP (100% identity) | CAGAG | StyCORF388P |
| 391 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4884 | subunit R of type I restriction-modification | |||
| 4885 | R | StyTMrrP (100% identity) | StyCMrrP | |
| 4886 | 95 aa hypothetical protein | |||