Escherichia coli O157:H7 SS17 |
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Putative Escherichia coli O157:H7 SS17 RM systems
Ref: Cote,R. et al. unpublished
REBASE ref # 17914
| Sequence length: | GenBank #: | |
| Chromosome: | 5,523,849 bp | CP008805 |
| plasmid p0157: | 94,645 bp | CP008806 |
REBASE acronym: EcoSS17
Org_num: 13396
All begin SS17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5502 | endoribonuclease | |||
| 5503 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoSS17ORF5504P |
| 5504 | M | M.EcoX21ORF4993P (100% identity) | CACNNNNNNNCTGG | M.EcoSS17ORF5504P |
| 5505 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoSS17ORF5504P |
| 5506 | 94 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1671 | 106 aa hypothetical protein | |||
| 1672 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoSS17ORF1672P | |
| 1675 | phage protein YjhS encoded within prophage | |||
| 1757 | 106 aa hypothetical protein | |||
| 1758 | M | M.EcoTWORF1742P (100% identity) | M.EcoSS17ORF1758P | |
| 1760 | 648 aa hypothetical protein | |||
| 2576 | Permease of the drug/metabolite transporter | |||
| 2577 | V | V.EcosPA8DcmP (100% identity) | V.EcoSS17DcmP | |
| 2578 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoSS17DcmP |
| 2579 | metal-dependent phosphohydrolase | |||
| 2742 | anti-termination protein | |||
| 2743 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoSS17ORF2743P |
| 2744 | recombination protein NinB | |||
| 3285 | NinE protein | |||
| 3286 | M | M.EcoTWORF3263P (100% identity) | GATC | M.EcoSS17ORF3286P |
| 3287 | endonuclease | |||
| 3320 | 76 aa hypothetical protein | |||
| 3321 | M | M.EspP079ORF2847P (100% identity) | GATC | M.EcoSS17ORF3321P |
| 3322 | 125 aa hypothetical protein | |||
| 4279 | DNA-binding protein Fis | |||
| 4280 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoSS17ORF4280P |
| 4281 | periplasmic protein | |||
| 4383 | Ribulose-phosphate 3-epimerase | |||
| 4384 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoSS17DamP |
| 4385 | an inner membrane protein | |||
| 5198 | exodeoxyribonuclease VIII | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoSS17ORFAP | |
| 5201 | Phage eae protein | |||
| 5453 | ATP-dependent helicase | |||
| 5454 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoSS17ORF5454P |
| plasmid p0157 | ||||
| 6029 | 41 aa hypothetical protein | |||
| 6030 | M | M.EcosPA8ORF27775P (98% identity) | M.EcoSS17ORF6030P | |
| 6031 | cytoplasmic protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5500 | Transcriptional regulator, GntR family domain / | |||
| 5501 | R | EcoCB9615GmrSDP (99% identity) | EcoSS17GmrSDP | |
| 5502 | endoribonuclease | |||