Streptomyces species PCS3-D2 |
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Putative Streptomyces species PCS3-D2 RM systems
Ref: Bayot-Custodio,A.N. et al. Genome Announc 2 (3), e00448-14 (2014)
REBASE ref # 17835
| Sequence length: | GenBank #: | |
| Chromosome: | (contig set) | JDUZ00000000 |
| Chromosome: | 7,512,055 bp | CP097800 |
REBASE acronym: SspPCS3D2
Org_num: 13299
All begin AW27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22280 | 418 aa hypothetical protein | |||
| 22285 | R | SspPCS3D2ORF19405P (100% identity) | SspPCS3D2ORF22295P | |
| ??? | S | S.SspPCS3D2ORF19405P (100% identity) | S.SspPCS3D2ORF22295P | |
| 22295 | M | M.SspPCS3D2ORF19405P (94% identity) | M.SspPCS3D2ORF22295P | |
| 22300 | 1326 aa hypothetical protein | |||
| 8710 | 214 aa hypothetical protein | |||
| 8715 | M | M.Ssp0648ORF13430P (82% identity) | M.SspPCS3D2ORF8715P | |
| ??? | S | S.SspPCS3D2ORF12685P (100% identity) | S.SspPCS3D2ORF8715P | |
| 8725 | 112 aa hypothetical protein | |||
| 8730 | 105 aa hypothetical protein | |||
| 8735 | DNA-binding protein | |||
| 8740 | regulatory protein | |||
| 8745 | R | SspPCS3D2ORF12685P (100% identity) | SspPCS3D2ORF8715P | |
| 8750 | 261 aa hypothetical protein | |||
| Chromosome | ||||
| 12645 | M48 family metallopeptidase | |||
| 12650 | R | SspPCS3D2ORF8715P (100% identity) | SspPCS3D2ORF12685P | |
| 12655 | DUF397 domain-containing protein | |||
| 12660 | helix-turn-helix transcriptional regulator | |||
| 12665 | 65 aa hypothetical protein | |||
| 12670 | 112 aa hypothetical protein | |||
| ??? | S | S.SspPCS3D2ORF8715P (100% identity) | S.SspPCS3D2ORF12685P | |
| 12685 | M | M.SspPCS3D2ORF8715P (48% identity) | M.SspPCS3D2ORF12685P | |
| 12690 | RloB family protein | |||
| 19390 | 418 aa hypothetical protein | |||
| 19395 | R | SspPCS3D2ORF22295P (100% identity) | SspPCS3D2ORF19405P | |
| 19400 | S | S.SspPCS3D2ORF22295P (100% identity) | S.SspPCS3D2ORF19405P | |
| 19405 | M | M.SspPCS3D2ORF22295P (94% identity) | M.SspPCS3D2ORF19405P | |
| 19410 | ricin-type beta-trefoil lectin domain protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 33535 | 146 aa hypothetical protein | |||
| 33540 | M | M.Sro5ORF33685P (80% identity) | M.SspPCS3D2ORF33540P | |
| 33545 | 74 aa hypothetical protein | |||
| 33545 | 74 aa hypothetical protein | |||
| 33550 | M | M.Ssp1511ORF19835P (74% identity) | M.SspPCS3D2ORF33550P | |
| 33555 | terminase | |||
| 60 | toxin | |||
| 65 | RM | Ssp1591ORF30915P (80% identity) | SspPCS3D2ORF65P | |
| 70 | helicase | |||
| Chromosome | ||||
| 7260 | DEAD/DEAH box helicase | |||
| 7265 | RM | Ssp1591ORF30915P (80% identity) | SspPCS3D2ORF65P | |
| 7270 | DUF397 domain-containing protein | |||
| 23620 | phage terminase small subunit P27 family | |||
| 23625 | M | M.Ssp1511ORF19835P (74% identity) | M.SspPCS3D2ORF33550P | |
| 23630 | 74 aa hypothetical protein | |||
| 23630 | 74 aa hypothetical protein | |||
| 23635 | M | M.Sro5ORF33685P (80% identity) | M.SspPCS3D2ORF33540P | |
| 23640 | helix-turn-helix domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7990 | DNA topoisomerase IV subunit A | |||
| 7995 | R | Ser3MrrP (94% identity) | SspPCS3D2MrrP | |
| 8000 | CAP domain-containing protein | |||