Escherichia coli SCB34 |
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Putative Escherichia coli SCB34 RM systems
Ref: Chavez-Bueno,S. et al. Genome Announc 2 (3), e00514-14 (2014)
REBASE ref # 17834
GenBank #: JMKH00000000
REBASE acronym: EcoSCB34
Org_num: 13362
All begin DH22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1485 | 41 aa hypothetical protein | |||
| 1486 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoSCB34ORF1487P |
| 1487 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoSCB34ORF1487P |
| 1488 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoSCB34ORF1487P |
| 1489 | Ynd | |||
| 4971 | 388 aa hypothetical protein | |||
| 4972 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoSCB34ORF4972P |
| 4973 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoSCB34ORF4972P |
| 4974 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoSCB34ORF4972P |
| 4975 | 112 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2953 | 70 aa hypothetical protein | |||
| ??? | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoSCB34ORF2954P |
| 2955 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoSCB34ORF2954P |
| 2956 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoSCB34ORF2954P |
| 2957 | 428 aa hypothetical protein | |||
| 1127 | 385 aa hypothetical protein | |||
| 1128 | M | M2.EcosS3ORF2905P (100% identity) | GTCGAC | M.EcoSCB34ORF1128P |
| 1129 | Antitermination protein Q | |||
| 4221 | 71 aa hypothetical protein | |||
| 4222 | M | M.KpnYN1ORFGP (89% identity) | M.EcoSCB34ORF4222P | |
| 4223 | 101 aa hypothetical protein | |||
| 2492 | 43 aa hypothetical protein | |||
| 2493 | M | M.EcosS9ORF10680P (79% identity) | M.EcoSCB34ORF2493P | |
| 3463 | 257 aa hypothetical protein | |||
| 3464 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.EcoSCB34ORF3464P |
| 3465 | R | Sso8033ORF3755P (99% identity) | CCWGG | EcoSCB34ORF3464P |
| 3466 | tmRNA-binding protein SmpB | |||
| 677 | 118 aa hypothetical protein | |||
| 678 | M | M.EcosS3ORF15775P (100% identity) | M.EcoSCB34ORF678P | |
| 679 | 986 aa hypothetical protein | |||
| 5298 | Ribulose-phosphate 3-epimerase | |||
| 5299 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCB34DamP |
| 5300 | DamX, an inner membrane protein involved in bile | |||
| 497 | Permease of the drug/metabolite transporter | |||
| 498 | V | V.SflC32DcmP (74% identity) | V.EcoSCB34DcmP | |
| 499 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoSCB34DcmP |
| 500 | metal-dependent phosphohydrolase | |||
| 4680 | DNA-binding protein Fis | |||
| 4681 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSCB34ORF4681P |
| 4682 | periplasmic protein | |||
| 2906 | Phage protein | |||
| 2907 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.EcoSCB34ORF2907P |
| 2908 | SOS-response repressor and protease LexA | |||
| 2915 | 67 aa hypothetical protein | |||
| 2916 | M | M.EcosR6ORF7985P (100% identity) | M.EcoSCB34ORF2916P | |
| 2917 | Phage holin | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2956 | Restriction endonuclease | |||
| 2957 | R | EcosS9McrCP (100% identity) | EcoSCB34McrCP | |
| 2958 | R | EcosS3McrBP (100% identity) | EcoSCB34McrBP | |
| 2959 | 60 aa hypothetical protein | |||