Escherichia coli 1728 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli 1728 RM systems
Ref: Lai,J.Y. et al. Genome Announc 2 (3), e00430-14 (2014)
REBASE ref # 17664
GenBank #: JDFV00000000
REBASE acronym: EcoE1728
Org_num: 13096
All begin AU10_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 24625 | 168 aa hypothetical protein | |||
| 24635 | R | Eco0135ORF23335P (99% identity) | EcoE1728ORF24645P | |
| 24640 | S | S.Ava175ORF11955P (79% identity) | S.EcoE1728ORF24645P | |
| 24645 | M | M.EcoLR25ORF4260P (99% identity) | M.EcoE1728ORF24645P | |
| 24650 | antitoxin | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22490 | resolvase | |||
| 22495 | M | M.Ecor024ORF8590P (100% identity) | GGTACC | M.EcoE1728ORF22495P |
| 22500 | R | Eco14168IIP (100% identity) | GGTACC | EcoE1728ORF22495P |
| 22505 | 91 aa hypothetical protein | |||
| 2980 | 73 aa hypothetical protein | |||
| 2985 | M | M.EcoEC416ORF1200P (100% identity) | M.EcoE1728ORF2985P | |
| 2990 | pseudogene | |||
| 19905 | LexA family transcriptional regulator | |||
| ??? | M | M.EcoS6995ORFGP (100% identity) | GATC | M.EcoE1728ORF19910P |
| 19915 | 162 aa hypothetical protein | |||
| 3000 | 73 aa hypothetical protein | |||
| 3005 | M | M.EcoE1140ORFAP (100% identity) | M.EcoE1728ORF3005P | |
| 3010 | transposase | |||
| 24500 | DNA recombinase | |||
| 24505 | M | M.Eco44C17ORF24390P (99% identity) | M.EcoE1728ORF24505P | |
| 24520 | TciA | |||
| 16630 | TciA | |||
| 16650 | M | M.Eco41C11ORF19295P (100% identity) | M.EcoE1728ORF16650P | |
| 16655 | 64 aa hypothetical protein | |||
| 23655 | 59 aa hypothetical protein | |||
| 23660 | M | M.EcoE1140ORF215050P (100% identity) | ATGCAT | M.EcoE1728ORF23660P |
| 23665 | Fis family transcriptional regulator | |||
| 17840 | 277 aa hypothetical protein | |||
| ??? | M | M.YpsF1ORFDP (100% identity) | M.EcoE1728ORF17845P | |
| 17850 | DNA-binding protein | |||
| 11735 | 439 aa hypothetical protein | |||
| 11745 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.EcoE1728ORF11745P |
| 11750 | nuclease | |||
| 4510 | ribulose-phosphate 3-epimerase | |||
| 4515 | M | M.UbaC1152DamP (99% identity) | GATC | M.EcoE1728DamP |
| 4520 | cell division protein DamX | |||
| 11035 | alkaline phosphatase | |||
| 11040 | RM | Ecoppa10ORF1735P (100% identity) | ACCYAC | EcoE1728ORF11040P |
| 11045 | BREX system P-loop protein BrxC | |||
| 15650 | multidrug DMT transporter | |||
| 15655 | V | V.SsoSE61DcmP (100% identity) | V.EcoE1728DcmP | |
| 15660 | M | M.SflLIN6DcmP (99% identity) | CCWGG | M.EcoE1728DcmP |
| 15665 | hydrolase | |||
| 8765 | protein ninE | |||
| ??? | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoE1728ORF8770P |
| 8780 | 146 aa hypothetical protein | |||