Salmonella enterica subsp. enterica serovar Typhimurium var. Copenhagen 0084 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium var. Copenhagen 0084 RM systems
Ref: Timme,R.E. et al. unpublished
REBASE ref # 17513
Contig set: 5,103,297 bp
GenBank #: AYVJ00000000 (NZ_AYVJ00000000)
REBASE acronym: Sen1284
Org_num: 12909
All begin SEET0084_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 9775 | endoribonuclease SymE | |||
| 9780 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen1284ORF9785P |
| 9785 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.Sen1284ORF9785P |
| 9790 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen1284ORF9785P |
| 9795 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4355 | 62 aa hypothetical protein | |||
| 4360 | M | M.StyUK1ORFAP (100% identity) | M.Sen1284ORF4360P | |
| 4365 | 73 aa hypothetical protein | |||
| 380 | 54 aa hypothetical protein | |||
| 385 | M | methyltransferase | ATGCAT | M.Sen1284ORF385P |
| 390 | Fis family transcriptional regulator | |||
| 20355 | multidrug transporter | |||
| 20360 | V | very short patch repair endonuclease | V.Sen1284DcmP | |
| 20365 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen1284DcmP |
| 20370 | hydrolase | |||
| 4580 | 131 aa hypothetical protein | |||
| 4585 | M | M.SenC1810ORF16105P (100% identity) | M.Sen1284ORF4585P | |
| 4590 | 149 aa hypothetical protein | |||
| 9630 | spermidine/putrescine ABC transporter ATPase | |||
| 9635 | RM | StyUK1IV (100% identity) | GATCAG | Sen1284ORF9635P |
| 9640 | DNA repair ATPase | |||
| 740 | 33 aa hypothetical protein | |||
| 745 | M | M.SflN101ORF24625P (100% identity) | M.Sen1284ORF745P | |
| 750 | 73 aa hypothetical protein | |||
| 20590 | crossover junction endodeoxyribonuclease | |||
| 20595 | M | M.StyUK1V (100% identity) | GATC | M.Sen1284ORF20595P |
| 20600 | 160 aa hypothetical protein | |||
| 4110 | cell division protein DamX | |||
| 4115 | M | DNA adenine methylase | GATC | M.Sen1284DamP |
| 4120 | ribulose-phosphate 3-epimerase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17605 | cytochrome D ubiquinol oxidase subunit I | |||
| 17610 | R | StyUK1IP (99% identity) | CAGAG | Sen1284ORF17615P |
| 17615 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen1284ORF17615P |
| 17620 | sugar transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9790 | DEAD/DEAH box helicase | |||
| 9795 | R | StyUK1MrrP (100% identity) | Sen1284MrrP | |
| 9800 | membrane protein | |||