Salmonella enterica subsp. enterica serovar Cerro 818 |
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Putative Salmonella enterica subsp. enterica serovar Cerro 818 RM systems
Ref: Timme,R.E. et al. Genome Biol Evol 5 (11), 2109-2123 (2013)
REBASE ref # 17513
| Sequence length: | GenBank #: | |
| Chromosome: | 4,736,638 bp | AOZJ00000000 (NZ_AOZJ00000000) |
| Chromosome: | 4,643,588 bp | CP149522 |
| plasmid pCFSAN001330_01: | 55,663 bp | CP149523 |
REBASE acronym: Sen1330
Org_num: 12884
All begin SEEC0818_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 374 | 54 aa hypothetical protein | |||
| 379 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.Sen1330ORF379P |
| 384 | DNA-binding protein Fis | |||
| 3133 | YfbA | |||
| 3138 | M | M.Sen4346ORF22715P (100% identity) | M.Sen1330ORF3138P | |
| 3143 | 73 aa hypothetical protein | |||
| 10282 | ribulose-phosphate 3-epimerase | |||
| 10287 | M | M.StyTDamP (100% identity) | GATC | M.Sen1330DamP |
| 10292 | cell division protein DamX | |||
| 4746 | HNH endonuclease | |||
| 4751 | M | M.SenCer87ORF1735P (100% identity) | GCCGGC | M.Sen1330ORF4751P |
| 4756 | TP901 family phage tail tape measure protein | |||
| 20461 | hydrolase | |||
| 20466 | M | M.SenCer87Dcm (100% identity) | CCWGG | M.Sen1330DcmP |
| 20471 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen1330DcmP |
| 20476 | DMT superfamily transporter inner | |||
| 20601 | 80 aa hypothetical protein | |||
| ??? | M | M.Sen543ORF3912P (100% identity) | GATC | M.Sen1330ORF20606P |
| 20611 | phage/conjugal plasmid C-4 type zinc finger | |||
| Chromosome | ||||
| 1685 | cell division protein DamX | |||
| 1690 | M | M.StyTDamP (100% identity) | GATC | M.Sen1330DamP |
| 1695 | ribulose-phosphate 3-epimerase | |||
| 2175 | DUF2556 family protein | |||
| 2180 | M | M.Sensp14178ORF2230P (100% identity) | ATGCAT | M.Sen1330ORF379P |
| 2185 | DNA-binding transcriptional regulator Fis | |||
| 13800 | drug/metabolite exporter YedA | |||
| 13805 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen1330DcmP |
| 13810 | M | M.SenCer87Dcm (100% identity) | CCWGG | M.Sen1330DcmP |
| 13815 | phosphohydrolase | |||
| 19715 | sigma factor-like helix-turn-helix DNA-binding | |||
| 19720 | R | Sen7502ORF18850P (96% identity) | Sen1330ORF19720P | |
| 19725 | malate transporter | |||
| 19725 | malate transporter | |||
| 19730 | M | M.SenCer87DndB (99% identity) | M.Sen1330DndBP | |
| 19735 | DNA phosphorothioation system sulfurtransferase | |||
| 19730 | DNA sulfur modification protein DndB | |||
| 19735 | M | M.SenCer87DndC (100% identity) | M.Sen1330DndCP | |
| 19740 | DNA sulfur modification protein DndD | |||
| 19735 | DNA phosphorothioation system sulfurtransferase | |||
| 19740 | M | M.Sen08DndDP (99% identity) | M.Sen1330DndDP | |
| 19745 | DNA sulfur modification protein DndE | |||
| 19740 | DNA sulfur modification protein DndD | |||
| 19745 | M | M.SspZ69DndEP (100% identity) | M.Sen1330DndEP | |
| 19750 | DUF262 domain-containing HNH endonuclease family | |||
| 19750 | DUF262 domain-containing HNH endonuclease family | |||
| 19755 | R | SspZ69DptHP (100% identity) | Sen1330DptHP | |
| 19760 | DNA phosphorothioation-dependent restriction | |||
| 19755 | DNA phosphorothioation-dependent restriction | |||
| 19760 | R | Sen08DptGP (100% identity) | Sen1330DptGP | |
| 19765 | DNA phosphorothioation-dependent restriction | |||
| 19760 | DNA phosphorothioation-dependent restriction | |||
| 19765 | R | SenCer87DptF (100% identity) | Sen1330DptFP | |
| 19770 | integrase arm-type DNA-binding domain-containing | |||
| plasmid pCFSAN001330_01 | ||||
| ??? | M | M.Sen4346ORF22715P (100% identity) | M.Sen1330ORF3138P | |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15639 | 33 aa hypothetical protein | |||
| ??? | R | Sen08ORF500P (99% identity) | CAGAG | Sen1330ORF15649P |
| 15649 | M | M.SenS316II (100% identity) | CAGAG | M.Sen1330ORF15649P |
| 15654 | sialic acid transporter | |||
| Chromosome | ||||
| 17365 | small effector SsaA | |||
| 17370 | R | Sen08ORF500P (99% identity) | CAGAG | Sen1330ORF15649P |
| 17375 | M | M.SenS316II (100% identity) | CAGAG | M.Sen1330ORF15649P |
| 17380 | MFS transporter | |||