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Putative Helicobacter pylori oki154 RM systems
Ref: Satou,K. et al. unpublished
REBASE ref # 17432
Complete sequence: 1,599,700 bp
GenBank #: CP006823
REBASE acronym: Hpy154
Org_num: 12452
All begin HPOKI154_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2295 | polyphosphate kinase | |||
2305 | S | S.Hpy828ORF2295P (99% identity) | S.Hpy154ORF2310P | |
2310 | M | M.HpyOki128ORF2295P (98% identity) | M.Hpy154ORF2310P | |
2315 | R | Hpy828ORF2295P (97% identity) | Hpy154ORF2310P | |
2320 | 631 aa hypothetical protein | |||
4010 | pseudogene | |||
??? | S | S.HpyK111XI (93% identity) | S.Hpy154ORF4015P | |
4020 | cadmium transporter | |||
4325 | hydroxyethylthiazole kinase | |||
4330 | R | Hpy673ORF4325P (99% identity) | Hpy154ORF4345P | |
??? | S | S.HpyAR9XII (96% identity) | S.Hpy154ORF4345P | |
4345 | M | M.Hpy828ORF4330P (96% identity) | M.Hpy154ORF4345P | |
4350 | membrane protein | |||
7140 | 31 aa hypothetical protein | |||
7145 | S | S.Hpy828ORF7155P (100% identity) | S.Hpy154ORF7145P | |
7150 | formyltetrahydrofolate deformylase | |||
7675 | FAD-dependent thymidylate synthase | |||
7680 | S | S.Hpyfe113ORF3020P (97% identity) | S.Hpy154ORF7685P | |
7685 | M | M.Hpy828ORF7695P (99% identity) | M.Hpy154ORF7685P | |
7690 | R | Hpy828ORF7695P (98% identity) | Hpy154ORF7685P | |
7695 | metal-dependent hydrolase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
280 | 177 aa hypothetical protein | |||
??? | R | HpyJA105ORF7135P (99% identity) | TGCA | Hpy154ORF290P |
290 | M | 38 aa hypothetical protein | TGCA | M.Hpy154ORF290P |
295 | transposase IS605 | |||
300 | transposase IS200 | |||
305 | M | DNA methyltransferase | CCTC | M.Hpy154ORF305P |
??? | R | Hpy169ORF230P (96% identity) | CCTC | Hpy154ORF305P |
315 | pseudogene | |||
530 | malonyl CoA-ACP transacylase | |||
540 | R | HpyOK95ORFLP (99% identity) | GATC | Hpy154ORF545P |
545 | M | M.HpyOK95ORFLP (100% identity) | GATC | M.Hpy154ORF545P |
550 | alpha-1,2-fucosyltransferase | |||
1420 | exodeoxyribonuclease VII large subunit | |||
1425 | M | M.Hpy828ORF1410P (100% identity) | TCGA | M.Hpy154ORF1425P |
1430 | 203 aa hypothetical protein | |||
1430 | 203 aa hypothetical protein | |||
1435 | R | HpyJA105ORF6075P (97% identity) | Hpy154ORF1440P | |
1440 | M | M.HpyAR3III (97% identity) | CCGG | M.Hpy154ORF1440P |
1445 | molecular chaperone ClpB | |||
1675 | 293 aa hypothetical protein | |||
1680 | R | Hpy673ORF1675P (99% identity) | CTNAG | Hpy154ORF1685P |
1685 | M | M.HpyOK68ORFMP (100% identity) | CTNAG | M.Hpy154ORF1685P |
1690 | 125 aa hypothetical protein | |||
2385 | membrane protein | |||
2390 | M | M.Hpy673ORF2380P (100% identity) | ATTAAT | M.Hpy154ORF2390P |
2395 | glycosyltransferase 9 family protein | |||
2400 | GTP-binding protein | |||
2405 | M | M.HpyJA106II (100% identity) | ACNGT | M.Hpy154ORF2405P |
2410 | R | Hpy828ORF2390P (100% identity) | ACNGT | Hpy154ORF2405P |
2415 | type II restriction endonuclease | |||
2410 | type II restriction endonuclease | |||
2415 | M | type II restriction endonuclease | ACGT | M.Hpy154ORF2415P |
2420 | 36 aa hypothetical protein | |||
2610 | integrase | |||
??? | M | DNA methyltransferase | ACGT | M.Hpy154ORF2615P |
2620 | pseudogene | |||
2730 | DNA gyrase subunit B | |||
2735 | M | M.Hpy673ORF2710P (99% identity) | M.Hpy154ORF2735P | |
2740 | R | Hpy673ORF2710P (100% identity) | Hpy154ORF2735P | |
2745 | membrane protein | |||
3405 | glycerol-3-phosphate dehydrogenase subunit C | |||
??? | RM | Hpy828ORF3400P (93% identity) | Hpy154ORFAP | |
3420 | membrane protein | |||
3495 | polysaccharide biosynthesis protein | |||
3500 | M | M.HpyOki128ORF3270P (100% identity) | CCNNGG | M.Hpy154ORF3500P |
3505 | R | Hpy828ORF3495P (100% identity) | CCNNGG | Hpy154ORF3500P |
3510 | polysaccharide biosynthesis protein | |||
4620 | flagellar hook protein FlgE | |||
4625 | R | HpyOki128ORF4365P (100% identity) | GTNNAC | Hpy154ORF4630P |
4630 | M | M.HpyJA107IX (100% identity) | GTNNAC | M.Hpy154ORF4630P |
4635 | ATP-dependent DNA helicase | |||
5390 | biotin carboxylase | |||
5395 | M | M.Hpy828ORF5390P (100% identity) | TCNNGA | M.Hpy154ORF5395P |
5400 | R | Hpy828ORF5390P (100% identity) | TCNNGA | Hpy154ORF5395P |
5405 | Laminin subunit alpha-2 precursor | |||
5580 | 144 aa hypothetical protein | |||
5585 | M | M.HpyJA106XIV (99% identity) | GCGC | M.Hpy154ORF5585P |
5590 | flgM protein | |||
6080 | hydrolase | |||
6085 | M | M.Hpy673ORF6065P (100% identity) | CATG | M.Hpy154ORF6085P |
6090 | 59 aa hypothetical protein | |||
6835 | peptidase S41 | |||
6840 | R | HpyJA106ORF290P (100% identity) | GANTC | Hpy154ORF6845P |
6845 | M | M.Hpy828ORF6855P (100% identity) | GANTC | M.Hpy154ORF6845P |
6850 | DNA methyltransferase | |||
6845 | DNA methyltransferase | |||
6850 | RM | HpySW27ORF6375P (80% identity) | Hpy154ORF6850P | |
6855 | nicotinate-nucleotide pyrophosphorylase | |||
7050 | lipopolysaccharide 1,2-glucosyltransferase | |||
7055 | M | M.Hpy828ORF7065P (100% identity) | GAATTC | M.Hpy154ORF7055P |
7060 | R | Hpy23ORF1309P (100% identity) | GAATTC | Hpy154ORF7055P |
7065 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
7355 | DNA polymerase I | |||
7360 | S | S2.HpyOK316ORFFP (95% identity) | S.Hpy154ORF7365P | |
??? | RM | Hpy828ORF7375P (75% identity) | Hpy154ORF7365P | |
7370 | amidophosphoribosyltransferase | |||
7495 | permease | |||
7500 | M | M1.HpyJA106IV (100% identity) | CCATC | M1.Hpy154ORF7500P |
7505 | M | M2.Hpy673ORF7490P (100% identity) | GATGG | M2.Hpy154ORF7500P |
7510 | R | Hpy673ORF7490P (100% identity) | Hpy154ORF7500P | |
7515 | membrane protein | |||
7600 | pseudogene | |||
??? | RM | Hpy673ORFAP (99% identity) | Hpy154ORF7610P | |
7615 | DEAD/DEAH box helicase | |||
7775 | 68 aa hypothetical protein | |||
7780 | M | M.Hpy673ORF7765P (98% identity) | TGCA | M.Hpy154ORF7780P |
7785 | DNA methyltransferase | |||
7780 | type II methylase | |||
7785 | M | M2.HpyOki128ORF6200P (99% identity) | CCTC | M2.Hpy154ORF7785P |
7790 | M | M1.HpyME02IX (98% identity) | CCTC | M1.Hpy154ORF7785P |
7795 | agmatine deiminase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
4155 | 145 aa hypothetical protein | |||
4160 | R | Hpy673ORF4150P (99% identity) | Hpy154ORF4165P | |
4165 | M | M.HpyOK314ORFOP (96% identity) | M.Hpy154ORF4165P | |
4170 | osmoprotection protein (proWX) | |||
6970 | endonuclease | |||
6975 | M | M.Hpy673ORF6960P (99% identity) | M.Hpy154ORF6975P | |
6980 | R | Hpy673ORF6960P (99% identity) | Hpy154ORF6975P | |
6990 | biotin synthase | |||
??? | 1180 aa hypothetical protein | |||
7615 | R | HpyOK95ORFEP (100% identity) | Hpy154ORF7620P | |
7620 | M | M.HpyOK68ORFFP (99% identity) | M.Hpy154ORF7620P | |
7625 | ATP-dependent DNA helicase RecG | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2780 | glutamine synthetase | |||
2785 | R | HpyOK13GmrSDP (87% identity) | Hpy154GmrSDP | |
2790 | 50S ribosomal protein L9 |