Shewanella decolorationis S12 |
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Putative Shewanella decolorationis S12 RM systems
Ref: Xu,M. et al. Genome Announc 1 (6), e00993-13 (2013)
REBASE ref # 16923
Contig set: 4,843,966 bp
GenBank #: AXZL00000000 (NZ_AXZL00000000)
REBASE acronym: SdeS12
Org_num: 11979
All begin SHD_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1281 | 39 aa hypothetical protein | |||
| 1282 | R | SdeNi13ORF20305P (99% identity) | SdeS12ORF1283P | |
| 1283 | M | M.EsaSS345ORFBP (95% identity) | M.SdeS12ORF1283P | |
| 1284 | S | S.Vpa1244ORFCP (43% identity) | S.SdeS12ORF1283P | |
| 1285 | smc domain-containing protein | |||
| 3088 | 296 aa hypothetical protein | |||
| 3089 | M | M.PshFM82ORF15870P (89% identity) | M.SdeS12ORF3089P | |
| 3090 | S | S.SdeNi13ORF21775P (66% identity) | S.SdeS12ORF3089P | |
| 3091 | R | Vme8563IP (89% identity) | SdeS12ORF3089P | |
| 3092 | smc domain-containing protein | |||
| 3093 | tigr02646 family protein | |||
| ??? | M | M.Vme9458ORFBP (96% identity) | M.SdeS12ORF3094P | |
| 3096 | atp-binding region atpase domain-containing | |||
| 4131 | 210 aa hypothetical protein | |||
| 4132 | R | Pni661ORF68P (79% identity) | SdeS12ORF4135P | |
| 4133 | transcriptional regulator | |||
| 4134 | S | S.VspG11AORF127P (46% identity) | S.SdeS12ORF4135P | |
| 4135 | M | M.Vch30ORF2444P (84% identity) | M.SdeS12ORF4135P | |
| 4136 | 127 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1310 | periplasmic protein | |||
| 1311 | M | M.SspMR4DamP (99% identity) | GATC | M.SdeS12ORF1311P |
| 1312 | sporulation domain-containing protein | |||
| 3429 | DEAD/DEAH box helicase domain-containing | |||
| 3430 | M | M.Vsp722ORFAP (83% identity) | M.SdeS12ORF3430P | |
| 3431 | chaperone protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1641 | restriction endonuclease | |||
| 1642 | R | Vpe15641ORFDP (99% identity) | SdeS12ORF1643P | |
| 1643 | M | M.Vpe15641ORFDP (100% identity) | M.SdeS12ORF1643P | |
| 1644 | cytoplasmic protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1287 | tigr02391 family protein | |||
| 1288 | R | SxiCQY1McrBP (97% identity) | SdeS12McrBP | |
| 1289 | R | SxiCQY1McrCP (98% identity) | SdeS12McrCP | |
| 1290 | 149 aa hypothetical protein | |||
| 1640 | conjugal transfer pilus assembly protein | |||
| 1641 | R | Vpe15641MrrP (100% identity) | SdeS12MrrP | |
| 1642 | type iii restriction enzyme | |||