Salmonella enterica subsp. enterica serovar Typhimurium DT104 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium DT104 RM systems
Ref: Mather,A.E. et al. unpublished
REBASE ref # 16713
| Sequence length: | GenBank #: | |
| Chromosome: | 4,933,631 bp | HF937208 |
| Chromosome: | 94,034 bp | HF937209 |
REBASE acronym: SenDT104
Org_num: 11441
All begin DT104_, DT104_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 45131 | endoribonuclease syme | |||
| 45141 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenDT104ORF45151P |
| 45151 | M | M.StyLTIII (100% identity) | GAGNNNNNNRTAYG | M.SenDT104ORF45151P |
| 45161 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenDT104ORF45151P |
| 45171 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20011 | membrane protein | |||
| 20021 | V | V.StyUK1DcmP (100% identity) | V.SenDT104DcmP | |
| 20031 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenDT104DcmP |
| 20041 | 231 aa conserved hypothetical protein | |||
| 20461 | phage protein | |||
| 20481 | M | M.StyUK1V (100% identity) | GATC | M.SenDT104ORF20481P |
| 20491 | prophage protein | |||
| 26751 | crossover junction endodeoxyribonuclease rusa | |||
| ??? | M | M.Sty13348ORF110P (100% identity) | GATC | M.SenDT104ORF26761P |
| 26781 | prophage protein | |||
| 33771 | Fis DNA-binding protein | |||
| 33781 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenDT104ORF33781P |
| 33791 | exported protein | |||
| 34671 | ribulose-phosphate 3-epimerase | |||
| 34681 | M | M.StyTDamP (100% identity) | GATC | M.SenDT104DamP |
| 34691 | DamX protein | |||
| 44831 | abc-type sugar/spermidine/putrescine | |||
| 44841 | RM | StyUK1IV (100% identity) | GATCAG | SenDT104ORF44841P |
| 44851 | dna repair atpase | |||
| Chromosome | ||||
| 591 | cytoplasmic protein | |||
| 601 | M | M.StyUK1ORFAP (100% identity) | M.SenDT104ORF601P | |
| 611 | cytoplasmic protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4001 | metabolite transport protein | |||
| 4011 | M | M.StyUK1I (100% identity) | CAGAG | M.SenDT104ORF4011P |
| 4021 | R | StyUK1IP (99% identity) | CAGAG | SenDT104ORF4011P |
| 4031 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 45161 | type i restriction enzyme ecoki subunit r | |||
| 45171 | R | StyUK1MrrP (100% identity) | SenDT104MrrP | |
| 45181 | 95 aa hypothetical protein | |||