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Putative Helicobacter pylori SouthAfrica20 RM systems
Ref: Duncan,S.S. et al. unpublished
REBASE ref # 16653
Complete sequence: 1,622,903 bp
GenBank #: CP006691
REBASE acronym: HpySA20
Org_num: 11153
All begin HPSA20_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
485 | polyphosphate kinase 1 | |||
487 | S | S.HpyCO6XII (95% identity) | S.HpySA20ORF488P | |
488 | M | M.HpyZ006XII (97% identity) | M.HpySA20ORF488P | |
??? | R | Hpy26A1ORF2170P (92% identity) | HpySA20ORF488P | |
492 | 631 aa hypothetical protein | |||
834 | outer membrane family protein | |||
??? | S | S.HpyU306IX (90% identity) | S.HpySA20ORF835P | |
837 | cadmium-translocating P-type ATPase | |||
897 | hydroxyethylthiazole kinase | |||
898 | R | HpyZ009ORF4050P (95% identity) | HpySA20ORF901P | |
??? | S | S.Hpyoh1ORF5270P (95% identity) | S.HpySA20ORF901P | |
901 | M | type I restriction-modification system, M | M.HpySA20ORF901P | |
902 | PAP2 superfamily protein | |||
1607 | 43 aa hypothetical protein | |||
1608 | S | S.HpyZ008XI (95% identity) | S.HpySA20ORF1609P | |
1609 | M | M.HpySP409XIV (95% identity) | M.HpySA20ORF1609P | |
1610 | R | HpyZ008ORF7040P (96% identity) | HpySA20ORF1609P | |
1611 | 235 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
55 | porphyromonas-type peptidyl-arginine deiminase | |||
56 | M | M1.HpySA50ORF1885P (98% identity) | CCTC | M1.HpySA20ORF56P |
??? | M | M2.Hpy26A1ORF265P (98% identity) | CCTC | M2.HpySA20ORF56P |
??? | R | HpyZ001XIVP (48% identity) | CCTC | HpySA20ORF56P |
62 | 57 aa hypothetical protein | |||
59 | HNH endonuclease family protein | |||
60 | R | HpySA20ORF56P (34% identity) | CCTTC | HpySA20ORF62P |
61 | hypothetical protein | |||
62 | M | 57 aa hypothetical protein | CCTTC | M1.HpySA20ORF62P |
63 | M | M.HpyZ001XIV (91% identity) | CCTTC | M2.HpySA20ORF62P |
64 | sodium/proline symporter | |||
106 | 335 aa hypothetical protein | |||
107 | M | M.HpyZ006XIII (97% identity) | GATC | M.HpySA20ORF107P |
108 | glycosyl transferase 11 family protein | |||
287 | exodeoxyribonuclease VII, large subunit | |||
288 | M | M.HpyZ007VII (95% identity) | TCGA | M.HpySA20ORF288P |
289 | 204 aa hypothetical protein | |||
289 | 204 aa hypothetical protein | |||
290 | R | HpyZ001IIIP (95% identity) | CCGG | HpySA20ORF291P |
??? | M | M.HpyZ009III (99% identity) | CCGG | M.HpySA20ORF291P |
293 | clp amino terminal domain protein | |||
508 | GTP-binding protein TypA/BipA | |||
509 | M | M.HpyZ001II (100% identity) | ACNGT | M.HpySA20ORF509P |
510 | R | HpyZ001IIP (100% identity) | ACNGT | HpySA20ORF509P |
511 | major Facilitator Superfamily protein | |||
512 | 86 aa hypothetical protein | |||
513 | M | M.HpyZ009ORF2275P (98% identity) | ACGT | M.HpySA20ORF513P |
514 | R | HpySA7ORF2320P (77% identity) | ACGT | HpySA20ORF513P |
515 | 52 aa hypothetical protein | |||
534 | DNA gyrase, B subunit | |||
535 | M | M.HpyZ001XII (99% identity) | GTAC | M.HpySA20ORF535P |
??? | R | HpyZ001XIIP (92% identity) | GTAC | HpySA20ORF535P |
538 | 38 aa hypothetical protein | |||
695 | 4Fe-4S dicluster domain protein | |||
??? | RM | HpyZ001ORF2405P (92% identity) | HpySA20ORF696P | |
698 | 439 aa hypothetical protein | |||
717 | 3-5 exonuclease | |||
718 | M | M.HpySA50ORF1155P (100% identity) | CCNNGG | M.HpySA20ORF718P |
??? | R | HpyZ001IVP (98% identity) | CCNNGG | HpySA20ORF718P |
720 | 3-5 exonuclease | |||
960 | flagellar hook-basal body s family protein | |||
??? | R | HpyC126ORF4415P (90% identity) | GTNNAC | HpySA20ORF963P |
??? | M | M.HpyZ001XIII (95% identity) | GTNNAC | M.HpySA20ORF963P |
965 | uvrD/REP helicase family protein | |||
1152 | acetyl-CoA carboxylase, biotin carboxylase | |||
1153 | M | M.HpyZ006IX (99% identity) | TCNNGA | M.HpySA20ORF1153P |
1154 | R | HpyZ001VIIIP (88% identity) | TCNNGA | HpySA20ORF1153P |
1155 | 201 aa hypothetical protein | |||
1197 | 144 aa hypothetical protein | |||
1198 | R | HpyZ001XVP (100% identity) | GCGC | HpySA20ORF1199P |
1199 | M | M.HpyZ001XV (99% identity) | GCGC | M.HpySA20ORF1199P |
1200 | anti-sigma-28 factor, FlgM family protein | |||
1449 | 52 aa hypothetical protein | |||
1450 | M | M.HpySA50ORF332P (98% identity) | CATG | M.HpySA20ORF1450P |
1451 | membrane protein | |||
1513 | membrane protein | |||
1514 | R | alwI restriction endonuclease family protein | CCATC | HpySA20ORF1514P |
1515 | 52 aa hypothetical protein | |||
1533 | DNA polymerase I family protein | |||
??? | S | S.HpyPOR111ORF7545P (59% identity) | S.HpySA20ORF1536P | |
1536 | RM | HpyZ007ORF6735P (98% identity) | HpySA20ORF1536P | |
1537 | phosphoribosyl transferase domain protein | |||
1564 | 88 aa hypothetical protein | |||
1565 | R | HpyH015VIP (81% identity) | CCATC | HpySA20ORF1565P |
1566 | outer membrane family protein | |||
1586 | 80 aa hypothetical protein | |||
1587 | RM | eco57I restriction-modification methylase family | HpySA20ORF1587P | |
1588 | 95 aa hypothetical protein | |||
1631 | 67 aa hypothetical protein | |||
1632 | M | M.HpyZ001IX (98% identity) | TGCA | M.HpySA20ORF1632P |
1633 | R | HpySA50ORF134P (98% identity) | TGCA | HpySA20ORF1632P |
1634 | YihY family domain protein | |||
1650 | DNA methylase family protein | |||
1651 | M | M1.HpyZ006V (99% identity) | GAAGA | M1.HpySA20ORF1651P |
1652 | M | M1.HpySP703ORF6470P (81% identity) | GAAGA | M2.HpySA20ORF1651P |
1653 | R | Hpy26A1ORF7045P (68% identity) | GAAGA | HpySA20ORF1651P |
1654 | two-component transcriptional regulatory family | |||
1665 | nicotinate-nucleotide diphosphorylase | |||
??? | RM | HpyZ001ORF7710P (83% identity) | GANTC | HpySA20ORF1666P |
1669 | 60 aa hypothetical protein | |||
1679 | integral membrane TerC family protein | |||
1680 | M | M.HpyZ007ORF7485P (99% identity) | CGCG | M.HpySA20ORF1680P |
1681 | R | HpyZ007ORF7485P (96% identity) | CGCG | HpySA20ORF1680P |
??? | site-specific DNA-methyltransferase | |||
1681 | 204 aa hypothetical protein | |||
??? | M | M.HpySA7ORF7860P (98% identity) | M.HpySA20ORF1682P | |
1684 | 366 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1588 | 95 aa hypothetical protein | |||
??? | R | HpySA7ORF7260P (97% identity) | HpySA20ORF1593P | |
??? | M | M.HpySA7ORF7260P (95% identity) | M.HpySA20ORF1593P | |
1595 | DEAD/DEAH box helicase family protein | |||
1635 | biotin synthase | |||
??? | R | HpySA7ORF7470P (94% identity) | HpySA20ORF1638P | |
1638 | M | M.HpyC005ORF7490P (90% identity) | M.HpySA20ORF1638P | |
1639 | DNA/RNA non-specific endonuclease family | |||
1648 | rod shape-determining MreC family protein | |||
1649 | R | Hpy26A1ORF7040P (94% identity) | HpySA20ORF1650P | |
1650 | M | M.HpyZ008ORF6320P (93% identity) | M.HpySA20ORF1650P | |
1651 | DNA methylase family protein |