Salmonella enterica subsp. enterica serovar Typhimurium STm6 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium STm6 RM systems
Ref: Hogg,G. et al. Genome Announc 1 (3) (2013)
REBASE ref # 16105
Contig set: 4,896,785 bp
GenBank #: AMED00000000 (NZ_AMED00000000)
REBASE acronym: SenSTm6
Org_num: 10784
All begin B575_, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22782 | endoribonuclease SymE | |||
| 22787 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSTm6ORF22792P |
| 22792 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSTm6ORF22792P |
| 22797 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSTm6ORF22792P |
| 22802 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10130 | DMT superfamily transporter inner membrane | |||
| 10135 | V | V.StyUK1DcmP (100% identity) | V.SenSTm6DcmP | |
| 10140 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSTm6DcmP |
| 10145 | hydrolase | |||
| 23458 | 62 aa hypothetical protein | |||
| 23463 | M | M.StyUK1ORFAP (100% identity) | M.SenSTm6ORF23463P | |
| 23468 | 73 aa hypothetical protein | |||
| 22630 | ABC-type sugar/spermidine/putrescine | |||
| 22635 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSTm6ORF22635P |
| 22640 | DNA repair ATPase | |||
| 17063 | DNA-binding protein Fis | |||
| 17068 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSTm6ORF17068P |
| 17073 | 54 aa hypothetical protein | |||
| 127 | DUF2732 family protein | |||
| 129 | M | M.SenSTm9ORF23047P (100% identity) | GATC | M.SenSTm6ORF24102P |
| 130 | 70 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1973 | inner membrane protein | |||
| 1978 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSTm6ORF1978P |
| 1983 | R | StyUK1IP (99% identity) | CAGAG | SenSTm6ORF1978P |
| 1988 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22797 | type I restriction enzyme EcoKI subunit R | |||
| 22802 | R | StyUK1MrrP (100% identity) | SenSTm6MrrP | |
| 22807 | toxin-antitoxin system, toxin component | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10380 | 129 aa hypothetical protein | |||
| 10385 | M | M.StyUK1V (100% identity) | GATC | M.SenSTm6ORF10385P |
| 10390 | phage protein | |||