Salmonella enterica subsp. enterica serovar Typhimurium STm11 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhimurium STm11 RM systems
Ref: Hogg,G. et al. Genome Announc 1 (3) (2013)
REBASE ref # 16105
Contig set: 4,895,647 bp
GenBank #: AMEF00000000 (NZ_AMEF00000000)
REBASE acronym: SenSTm11
Org_num: 10786
All begin B579_, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22862 | endoribonuclease SymE | |||
| 22867 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSTm11ORF22872P |
| 22872 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSTm11ORF22872P |
| 22877 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSTm11ORF22872P |
| 22882 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17091 | DNA-binding protein Fis | |||
| 17096 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSTm11ORF17096P |
| 17101 | 54 aa hypothetical protein | |||
| 10435 | DMT superfamily transporter inner membrane | |||
| 10440 | V | V.StyUK1DcmP (100% identity) | V.SenSTm11DcmP | |
| 10445 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSTm11DcmP |
| 10450 | hydrolase | |||
| 19 | DUF2732 family protein | |||
| 21 | M | M.SenSTm9ORF23047P (100% identity) | GATC | M.SenSTm11ORF24240P |
| 22 | 70 aa hypothetical protein | |||
| 23389 | 62 aa hypothetical protein | |||
| 23394 | M | M.StyUK1ORFAP (100% identity) | M.SenSTm11ORF23394P | |
| 23399 | 73 aa hypothetical protein | |||
| 22705 | ABC-type sugar/spermidine/putrescine | |||
| 22710 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSTm11ORF22710P |
| 22715 | DNA repair ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2443 | inner membrane protein | |||
| 2448 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSTm11ORF2448P |
| 2453 | R | StyUK1IP (99% identity) | CAGAG | SenSTm11ORF2448P |
| 2458 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22877 | type I restriction enzyme EcoKI subunit R | |||
| 22882 | R | StyUK1MrrP (100% identity) | SenSTm11MrrP | |
| 22887 | toxin-antitoxin system, toxin component | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10685 | 129 aa hypothetical protein | |||
| 10690 | M | M.StyUK1V (100% identity) | GATC | M.SenSTm11ORF10690P |
| 10695 | phage protein | |||