Salmonella enterica subsp. enterica serovar Typhimurium STm8 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium STm8 RM systems
Ref: Hogg,G. et al. Genome Announc 1 (3) (2013)
REBASE ref # 16105
Contig set: 4,896,971 bp
GenBank #: AMDZ00000000 (NZ_AMDZ00000000)
REBASE acronym: SenSTm8
Org_num: 10781
All begin B576_, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22739 | endoribonuclease SymE | |||
| 22744 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSTm8ORF22749P |
| 22749 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSTm8ORF22749P |
| 22754 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSTm8ORF22749P |
| 22759 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16990 | DNA-binding protein Fis | |||
| 16995 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSTm8ORF16995P |
| 17000 | 54 aa hypothetical protein | |||
| 10124 | DMT superfamily transporter inner membrane | |||
| 10129 | V | V.StyUK1DcmP (100% identity) | V.SenSTm8DcmP | |
| 10134 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSTm8DcmP |
| 10139 | hydrolase | |||
| 23395 | 62 aa hypothetical protein | |||
| 23400 | M | M.StyUK1ORFAP (100% identity) | M.SenSTm8ORF23400P | |
| 23405 | 73 aa hypothetical protein | |||
| 22582 | ABC-type sugar/spermidine/putrescine | |||
| 22587 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSTm8ORF22587P |
| 22592 | DNA repair ATPase | |||
| 156 | 70 aa hypothetical protein | |||
| 157 | M | M.SenSTm9ORF23047P (100% identity) | GATC | M.SenSTm8ORF24051P |
| 159 | DUF2732 family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1948 | inner membrane protein | |||
| 1953 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSTm8ORF1953P |
| 1958 | R | StyUK1IP (99% identity) | CAGAG | SenSTm8ORF1953P |
| 1963 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22754 | type I restriction enzyme EcoKI subunit R | |||
| 22759 | R | StyUK1MrrP (100% identity) | SenSTm8MrrP | |
| 22764 | toxin-antitoxin system, toxin component | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10379 | 129 aa hypothetical protein | |||
| 10384 | M | M.StyUK1V (100% identity) | GATC | M.SenSTm8ORF10384P |
| 10389 | phage protein | |||