Salmonella enterica subsp. enterica serovar Typhimurium STm4 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium STm4 RM systems
Ref: Hogg,G. et al. Genome Announc 1 (3) (2013)
REBASE ref # 16105
Contig set: 4,903,391 bp
GenBank #: AMEC00000000 (NZ_AMEC00000000)
REBASE acronym: SenSTm4
Org_num: 10783
All begin B574_, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22508 | endoribonuclease SymE | |||
| 22513 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSTm4ORF22518P |
| 22518 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSTm4ORF22518P |
| 22523 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSTm4ORF22518P |
| 22528 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16960 | DNA-binding protein Fis | |||
| ??? | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSTm4ORF16965P |
| 23355 | 62 aa hypothetical protein | |||
| 23360 | M | adenine-specific DNA methylase | M.SenSTm4ORF23360P | |
| 9832 | DMT superfamily transporter inner membrane | |||
| 9837 | V | V.StyUK1DcmP (100% identity) | V.SenSTm4DcmP | |
| 9842 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSTm4DcmP |
| 9847 | hydrolase | |||
| 22356 | ABC-type sugar/spermidine/putrescine | |||
| 22361 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSTm4ORF22361P |
| 22366 | DNA repair ATPase | |||
| 156 | 70 aa hypothetical protein | |||
| 157 | M | M.SenSTm9ORF23047P (100% identity) | GATC | M.SenSTm4ORF24202P |
| 159 | DUF2732 family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1599 | inner membrane protein | |||
| 1604 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSTm4ORF1604P |
| 1609 | R | StyUK1IP (99% identity) | CAGAG | SenSTm4ORF1604P |
| 1614 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22523 | type I restriction enzyme EcoKI subunit R | |||
| 22528 | R | StyUK1MrrP (100% identity) | SenSTm4MrrP | |
| 22533 | toxin-antitoxin system, toxin component | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10092 | 129 aa hypothetical protein | |||
| 10097 | M | M.StyUK1V (100% identity) | GATC | M.SenSTm4ORF10097P |
| 10102 | phage protein | |||