Salmonella enterica subsp. enterica serovar Typhimurium STm1 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium STm1 RM systems
Ref: Hogg,G. et al. Genome Announc 1 (3) (2013)
REBASE ref # 16105
Contig set: 4,899,715 bp
GenBank #: AMDX00000000 (NZ_AMDX00000000)
REBASE acronym: SenSTm1
Org_num: 10778
All begin B571_, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22530 | endoribonuclease SymE | |||
| 22535 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSTm1ORF22540P |
| 22540 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSTm1ORF22540P |
| 22545 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSTm1ORF22540P |
| 22550 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10061 | DMT superfamily transporter inner membrane | |||
| 10066 | V | V.StyUK1DcmP (100% identity) | V.SenSTm1DcmP | |
| 10071 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSTm1DcmP |
| 10076 | hydrolase | |||
| 16908 | DNA-binding protein Fis | |||
| 16913 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSTm1ORF16913P |
| 16918 | 54 aa hypothetical protein | |||
| 23174 | 62 aa hypothetical protein | |||
| 23179 | M | M.StyUK1ORFAP (100% identity) | M.SenSTm1ORF23179P | |
| 23184 | 73 aa hypothetical protein | |||
| 127 | DUF2732 family protein | |||
| 129 | M | M.SenSTm9ORF23047P (100% identity) | GATC | M.SenSTm1ORF23794P |
| 130 | 70 aa hypothetical protein | |||
| 22378 | ABC-type sugar/spermidine/putrescine | |||
| 22383 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSTm1ORF22383P |
| 22388 | DNA repair ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1831 | inner membrane protein | |||
| 1836 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSTm1ORF1836P |
| 1841 | R | StyUK1IP (99% identity) | CAGAG | SenSTm1ORF1836P |
| 1846 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22545 | type I restriction enzyme EcoKI subunit R | |||
| 22550 | R | StyUK1MrrP (100% identity) | SenSTm1MrrP | |
| 22555 | toxin-antitoxin system, toxin component | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10311 | 129 aa hypothetical protein | |||
| 10316 | M | M.StyUK1V (100% identity) | GATC | M.SenSTm1ORF10316P |
| 10321 | phage protein | |||