|
Putative Helicobacter pylori UM037 RM systems
Ref: Khosravi,Y. et al. unpublished
REBASE ref # 16031
Complete sequence: 1,692,794 bp
GenBank #: CP005492
REBASE acronym: HpyUM037
Org_num: 10627
All begin K750_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
6465 | integrase | |||
??? | S | S.HpyKH41ORFTP (97% identity) | S.HpyUM037ORF1290P | |
6455 | membrane protein | |||
8650 | 45 aa hypothetical protein | |||
6460 | S | S.HpyUM037ORF1290P (91% identity) | S.HpyUM037ORF6460P | |
8655 | 33 aa hypothetical protein | |||
9870 | helicase | |||
5000 | S | S.Hpy499ORF1545P (95% identity) | S.HpyUM037ORF5000P | |
4995 | CAAX protease | |||
4715 | hydroxyethylthiazole kinase | |||
4710 | R | HpyKH9ORFA1P (95% identity) | HpyUM037ORF4700P | |
??? | S | S.HpySW06ORF2610P (97% identity) | S.HpyUM037ORF4700P | |
??? | M | M.HpyK008ORF2545P (74% identity) | M.HpyUM037ORF4700P | |
4695 | membrane protein | |||
3790 | 631 aa hypothetical protein | |||
9990 | R | HpySP504ORF2130P (89% identity) | HpyUM037ORF3770P | |
3770 | M | M.HpyK117ORF2250P (87% identity) | M.HpyUM037ORF3770P | |
3765 | S | S.HpyLIM7XI (98% identity) | S.HpyUM037ORF3770P | |
3760 | polyphosphate kinase | |||
735 | LPP20 lipofamily protein | |||
730 | S | S.HpyC002ORF3730P (97% identity) | S.HpyUM037ORF715P | |
725 | CAAX protease | |||
10195 | M | M.HpyU106ORF7545P (94% identity) | M.HpyUM037ORF715P | |
710 | R | HpyISR7ORF7245P (27% identity) | HpyUM037ORF715P | |
705 | integrase | |||
550 | integrase | |||
??? | R | HpyU203ORF7570P (67% identity) | HpyUM037ORF545P | |
10205 | pseudogene | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
7200 | exodeoxyribonuclease VII large subunit | |||
9640 | M | M.Hpy13345ORF419P (89% identity) | M.HpyUM037ORF9640P | |
7190 | membrane protein | |||
7200 | exodeoxyribonuclease VII large subunit | |||
??? | M | TCGA site-specific m6A methyltransferase | TCGA | M.HpyUM037ORF7195P |
7190 | membrane protein | |||
7035 | Laminin subunit alpha-2 precursor | |||
9650 | R | HpyK110ORF1170P (98% identity) | TCNNGA | HpyUM037ORF7015P |
9655 | M | M.HpyKH18ORFB1P (94% identity) | TCNNGA | M.HpyUM037ORF7015P |
8585 | methyltransferase | |||
1635 | nicotinate-nucleotide pyrophosphorylase | |||
??? | RM | HpyUM037ORF1650P (71% identity) | HpyUM037ORF1640P | |
1655 | 36 aa hypothetical protein | |||
5655 | membrane protein | |||
5650 | RM | HpyBG3ORF3425P (90% identity) | GTGGNAG | HpyUM037X |
5645 | glycerol-3-phosphate dehydrogenase | |||
4405 | flagellar hook protein FlgE | |||
4400 | R | HpyNP10VIIP (98% identity) | GTNNAC | HpyUM037VP |
9935 | M | M.HpyNP10VII (97% identity) | GTNNAC | M.HpyUM037V |
4390 | ATP-dependent DNA helicase | |||
4010 | membrane protein | |||
4005 | R | HpyR08XIP (99% identity) | GTAC | HpyUM037ORF4000P |
4000 | adenine methyltransferase | |||
4005 | restriction endonuclease R.HpyAXII | |||
4000 | M | M.HpyKH1ORFQP (100% identity) | GTAC | M.HpyUM037XI |
3995 | DNA gyrase subunit B | |||
3890 | catalase | |||
??? | R | HpyKH21ORFZP (97% identity) | ACGT | HpyUM037ORF3880P |
3880 | M | M.HpyLI41ORF2400P (97% identity) | ACGT | M.HpyUM037ORF3880P |
3875 | restriction endonuclease | |||
3880 | DNA methyltransferase | |||
3875 | R | HpyPU001IIP (99% identity) | ACNGT | HpyUM037IIP |
3870 | M | M.HpyMM01II (98% identity) | ACNGT | M.HpyUM037II |
3865 | GTP-binding protein | |||
3860 | glycosyltransferase 9 family protein | |||
3855 | M | M.HpyKH20ORFZP (99% identity) | ATTAAT | M.HpyUM037VII |
3850 | membrane protein | |||
10000 | 78 aa hypothetical protein | |||
3330 | M | M.HpyJO10ORF3945P (99% identity) | GCNGC | M.HpyUM037ORF3330P |
3325 | GTP-binding protein LepA | |||
2890 | chaperone protein ClpB | |||
2885 | M | M.HpyKH8ORFSP (99% identity) | CCGG | M.HpyUM037IX |
2880 | R | HpyP004IVP (98% identity) | CCGG | HpyUM037IXP |
10035 | 69 aa hypothetical protein | |||
10035 | 69 aa hypothetical protein | |||
??? | M | 217 aa hypothetical protein | TCGA | M.HpyUM037ORF2870P |
2865 | Sel1 repeat protein | |||
2845 | 144 aa hypothetical protein | |||
2840 | M | M.HpyPU009ORF5295P (97% identity) | GCGC | M.HpyUM037ORF2840P |
2835 | flagellar biosynthesis anti-sigma factor FlgM | |||
2405 | hydrolase | |||
2400 | M | M.HpyNP10I (98% identity) | CATG | M.HpyUM037I |
2395 | 59 aa hypothetical protein | |||
1685 | peptidase S41 | |||
1680 | R | HpySP509VIIP (97% identity) | GANTC | HpyUM037IVP |
1675 | M | M.HpySP210VI (99% identity) | GANTC | M.HpyUM037IV |
8925 | 174 aa hypothetical protein | |||
1675 | DNA methyltransferase | |||
??? | RM | Hpy5016ORF3690P (85% identity) | HpyUM037ORF1650P | |
1635 | nicotinate-nucleotide pyrophosphorylase | |||
1675 | DNA methyltransferase | |||
10110 | RM | HpyKH33ORFRP (20% identity) | HpyUM037ORF10110P | |
1650 | pseudogene | |||
1105 | DEAD/DEAH box helicase | |||
1100 | RM | HpyKH28ORFUP (69% identity) | HpyUM037ORF1100P | |
1095 | 179 aa hypothetical protein | |||
995 | membrane protein | |||
990 | R | HpyFD662ORF310P (97% identity) | CCATC | HpyUM037VIP |
??? | M | M2.HpyUM023ORF1405P (100% identity) | CCATC | M2.HpyUM037VI |
980 | M | M1.HpyGE9III (99% identity) | CCATC | M1.HpyUM037VI |
975 | permease | |||
840 | amidophosphoribosyltransferase | |||
835 | RM | HpyUM084ORF1905P (96% identity) | HpyUM037ORF835P | |
830 | S | S.HpyP009ORF7325P (94% identity) | S.HpyUM037ORF835P | |
825 | DNA polymerase I | |||
465 | 67 aa hypothetical protein | |||
460 | M | M.HpyI004V (98% identity) | TGCA | M.HpyUM037VIII |
455 | R | HpyKH36ORFFP (100% identity) | TGCA | HpyUM037VIIIP |
450 | elongation factor Ts | |||
9165 | agmatine deiminase | |||
9170 | M | M1.HpyKH21ORFNP (99% identity) | CCTC | M1.HpyUM037ORF8305P |
??? | M | M1.HpyKH21ORFNP (49% identity) | CCTC | M2.HpyUM037ORF8305P |
??? | R | 99 aa hypothetical protein | CCTC | HpyUM037ORF8305P |
??? | 325 aa hypothetical protein | |||
??? | 99 aa hypothetical protein | |||
??? | R | HpyKH26ORFRP (99% identity) | CCTTC | HpyUM037ORF8285P |
9185 | M | M.HpyKH20ORFLP (100% identity) | CCTTC | M.HpyUM037ORF8285P |
9190 | proline:sodium symporter PutP | |||
10290 | pseudogene | |||
9405 | M | M.HpyLI30X (97% identity) | GATC | M.HpyUM037III |
10295 | alpha-1,2-fucosyltransferase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1575 | chemotaxis protein CheY | |||
1570 | M | M.HpyT001XVII (95% identity) | GGCAA | M.HpyUM037XII |
??? | R | HpyKH27ORFWP (84% identity) | GGCAA | HpyUM037XIIP |
1555 | rod shape-determining protein MreC | |||
1500 | endonuclease | |||
??? | M | M.HpyI009ORF7025P (83% identity) | M.HpyUM037ORF1490P | |
1485 | R | HpyBGR5ORF6970P (93% identity) | HpyUM037ORF1490P | |
1480 | biotin synthase | |||
1115 | ATP-dependent DNA helicase RecG | |||
??? | M | M.HpyME41ORF7315P (95% identity) | M.HpyUM037ORF8995P | |
1105 | R | HpyGRE043ORF7300P (95% identity) | HpyUM037ORF8995P | |
1100 | restriction endonuclease | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
4225 | glutamine synthetase | |||
9955 | R | HpyU120GmrSDP (83% identity) | HpyUM037GmrSDP | |
4210 | 50S ribosomal protein L9 |