Pseudomonas putida LS46 |
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Putative Pseudomonas putida LS46 RM systems
Ref: Sharma,P.K. et al. Can. J. Microbiol. 58 (8), 982-989 (2012)
REBASE ref # 15435
Contig set: 5,874,759 bp
GenBank #: ALPV00000000 (NZ_ALPV00000000)
REBASE acronym: PpuS46
Org_num: 9912
All begin PPUTLS46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6986 | 226 aa hypothetical protein | |||
| 6991 | R | PpuR51ORF17905P (99% identity) | PpuS46ORF18667P | |
| 6996 | 174 aa hypothetical protein | |||
| 7001 | M | M.PspCOR54ORF6755P (98% identity) | M.PpuS46ORF18667P | |
| 7006 | S | S.PspCOR54ORF6755P (65% identity) | S.PpuS46ORF18667P | |
| 7011 | 657 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11475 | 90 aa hypothetical protein | |||
| 11480 | M | M.Ppu5855ORF17760P (97% identity) | TGGCCA | M.PpuS46ORF11480P |
| 11485 | DNA-cytosine methyltransferase | |||
| 11480 | n6 adenine-specific DNA methyltransferase | |||
| 11485 | M | M.Ppu409ORF24440P (86% identity) | M.PpuS46ORF11485P | |
| 11490 | 134 aa hypothetical protein | |||
| 1797 | 129 aa hypothetical protein | |||
| 1802 | M | M.Psy13102ORF3320P (69% identity) | ACGGC | M.PpuS46ORF1802P |
| 1807 | 119 aa hypothetical protein | |||
| 17744 | ISPpu14, transposase Orf1 | |||
| 17749 | M | M.PflSC1ORF13085P (58% identity) | CCCGGG | M.PpuS46ORF17749P |
| 17754 | R | Pbr1400ORF25130P (90% identity) | CCCGGG | PpuS46ORF17749P |
| 17759 | 100 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7006 | type I restriction-modification system subunit | |||
| 7011 | R | PfuBGmrSDP (98% identity) | PpuS46GmrSDP | |
| 7016 | 781 aa hypothetical protein | |||