|
Putative Klebsiella oxytoca M5al RM systems
Ref: Bao,G. et al. Genome Announc (2013) In press
REBASE ref # 15560
Contig set: 5,844,702 bp
GenBank #: AMPJ00000000 (NZ_AMPJ00000000)
REBASE acronym: KoxM5a1
Org_num: 10187
All begin KOXM_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
18937 | ABC transporter ATP-binding protein | |||
18942 | R | KspM5a1ORF3680P (100% identity) | GGCANNNNNNTTC | KoxM5a1ORF18932P |
18947 | S | S.KspM5a1ORF3680P (100% identity) | GGCANNNNNNTTC | S.KoxM5a1ORF18932P |
18952 | M | M.KmiM4a1ORF4810P (100% identity) | GGCANNNNNNTTC | M.KoxM5a1ORF18932P |
18957 | restriction endonuclease | |||
4771 | 92 aa hypothetical protein | |||
4776 | S | S.KspM5a1ORF3365P (100% identity) | S.KoxM5a1ORF4781P | |
??? | M | M.Rpl9179ORF5094P (65% identity) | M.KoxM5a1ORF4781P | |
4786 | 131 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
496 | ribulose-phosphate 3-epimerase | |||
501 | M | M.PmeBin334DamP (100% identity) | GATC | M.KoxM5a1DamP |
506 | cell division protein DamX | |||
15308 | hydrolase | |||
??? | M | DNA-cytosine methyltransferase | CCWGG | M.KoxM5a1DcmP |
??? | DNA-cytosine methyltransferase | |||
??? | DNA-cytosine methyltransferase | |||
??? | M | DNA-cytosine methyltransferase | CCWGG | M.KoxM5a1Dcm2P |
15323 | V | V.PmeBin334DcmP (100% identity) | V.KoxM5a1Dcm2P | |
15328 | DMT superfamily transporter inner membrane | |||
12229 | 73 aa hypothetical protein | |||
12234 | M | M.KspM5a1ORF15860P (100% identity) | GATC | M.KoxM5a1ORF12234P |
12239 | 75 aa hypothetical protein | |||
28555 | 217 aa hypothetical protein | |||
28560 | M | M.KspM5a1ORF12135P (100% identity) | M.KoxM5a1ORF28560P | |
28565 | 85 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
18952 | Type I restriction-modification system | |||
18957 | R | KspM5a1MrrP (100% identity) | KoxM5a1MrrP | |
18962 | transcriptional regulator, GntR |