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Putative Rhodanobacter denitrificans 2APBS1 RM systems
Ref: Kostka,J.E. et al. J. Bacteriol. 194 (16), 4461-4462 (2012)
REBASE ref # 14775
Contig set: 4,167,392 bp
GenBank #: AGIL00000000 (NZ_AGIL00000000)
REBASE acronym: RdeR2
Org_num: 9229
All begin R2APBS1DRAFT_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
3361 | cysteine dioxygenase type I | |||
3362 | R | RdePBS1ORF8875P (100% identity) | RdeR2ORF3363P | |
3363 | M | M.RdePBS1ORF8875P (100% identity) | M.RdeR2ORF3363P | |
3364 | S | S.RdePBS1ORF8875P (100% identity) | S.RdeR2ORF3363P | |
3365 | SMC domain protein | |||
3538 | peptidase M61 domain protein | |||
3539 | M | M.Rsp24678ORF13313P (100% identity) | M.RdeR2ORF3539P | |
3540 | restriction modification system DNA specificity | |||
3541 | plasmid maintenance system killer | |||
3542 | plasmid maintenance system antidote protein, XRE | |||
3543 | R | RdeR2ORF3623P (100% identity) | RdeR2ORF3539P | |
3544 | glycerophosphoryl diester phosphodiesterase | |||
3539 | N-6 DNA methylase | |||
3540 | S | S.RdePBS1ORF14930P (100% identity) | S.RdeR2ORF3623P | |
3541 | plasmid maintenance system killer | |||
845 | 165 aa hypothetical protein | |||
846 | R | Rsp24678ORF17055P (100% identity) | RdeR2ORF846P | |
847 | helix-turn-helix domain protein | |||
854 | 393 aa hypothetical protein | |||
855 | S | S.RdeR3ORF17580P (100% identity) | S.RdeR2ORF856P | |
856 | M | M.Rsp24678ORF17005P (100% identity) | M.RdeR2ORF856P | |
857 | helix-turn-helix domain protein | |||
1481 | restriction endonuclease | |||
1482 | M | M.RdePBS1ORF5950P (100% identity) | M.RdeR2ORF1482P | |
1483 | S | S.RdePBS1ORF5950P (100% identity) | S.RdeR2ORF1482P | |
1484 | 203 aa hypothetical protein | |||
1485 | R | RdePBS1ORF5950P (87% identity) | RdeR2ORF1482P | |
1486 | 164 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
2348 | AAA ATPase | |||
2349 | M | M.RdeR5ORF10390P (92% identity) | M.RdeR2ORF2349P | |
2350 | 170 aa hypothetical protein | |||
26 | Appr-1-p processing domain protein | |||
??? | R | RdePBS1ORF160P (100% identity) | GCNGC | RdeR2I |
27 | 282 aa hypothetical protein | |||
29 | histidine kinase | |||
30 | M | M.RdePBS1ORF180P (100% identity) | M.RdeR2ORF423P | |
??? | V | V.RdePBS1ORF180P (92% identity) | V.RdeR2ORF423P | |
31 | 248 aa hypothetical protein | |||
2642 | 282 aa hypothetical protein | |||
2643 | M | M.RdeR5ORF18555P (100% identity) | RGATCY | M.RdeR2ORF2643P |
2644 | adenine-specific DNA methyltransferase | |||
1612 | 56 aa hypothetical protein | |||
1613 | M | M.RdePBS1ORF11160P (100% identity) | M.RdeR2ORF1613P | |
1614 | phage tail fiber assembly-like protein | |||
2479 | protein of unknown function DUF6 transmembrane | |||
??? | R | RdeR5ORF9560P (100% identity) | CTCGAG | RdeR2ORF2199P |
2481 | 582 aa hypothetical protein | |||
??? | Type II site-specific deoxyribonuclease | |||
2481 | M | M.RdePBS1ORF7850P (100% identity) | CTCGAG | M.RdeR2ORF2481P |
2482 | polysaccharide deacetylase | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1036 | NERD domain protein | |||
1037 | R | RdePBS1ORF3675P (100% identity) | RdeR2ORF1038P | |
1038 | M | M.Rsp24678ORF7981P (96% identity) | M.RdeR2ORF1038P | |
1039 | 195 aa hypothetical protein | |||
238 | amino acid permease-associated region | |||
239 | R | RdePBS1ORF1265P (100% identity) | RdeR2ORF242P | |
240 | plasmid maintenance system killer | |||
241 | plasmid maintenance system antidote protein, XRE | |||
242 | M | M.Rsp24678ORF8833P (99% identity) | M.RdeR2ORF242P | |
243 | 142 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
1821 | 243 aa hypothetical protein | |||
1822 | R | Rsp24678MrrP (100% identity) | RdeR2Mrr2P | |
1823 | 189 aa hypothetical protein | |||
1480 | metal dependent phosphohydrolase | |||
1481 | R | Mth10409MrrP (57% identity) | RdeR2MrrP | |
1482 | N-6 DNA methylase |