Escherichia coli W (UFlorida) |
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Putative Escherichia coli W (UFlorida) RM systems
Ref: Turner,P.C. et al. J. Ind. Microbiol. Biotechnol. 39 (4), 629-639 (2012)
REBASE ref # 14220
| Sequence length: | GenBank #: | |
| Chromosome: | 4,897,452 bp | CP002967 |
| plasmid pRK1: | 102,535 bp | CP002968 |
REBASE acronym: EcoW
Org_num: 6484
All begin WFL_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22580 | N-6 DNA methylase | |||
| 22585 | R | EcohubtORF20055P (100% identity) | AACNNNNNNGTGC | EcoWORF4637P |
| 22590 | 227 aa hypothetical protein | |||
| 22690 | 428 aa hypothetical protein | |||
| 22695 | S | S.SflN101ORF11895P (100% identity) | TGANNNNNNTCCA | S.EcoWORF4661P |
| 22700 | M | M.EcohubtORF19935P (100% identity) | TGANNNNNNTCCA | M.EcoWORF4661P |
| 22705 | 128 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4450 | DksA/TraR protein family with a zinc | |||
| 4455 | M | M.EcohubtORF7795P (100% identity) | GATC | M.EcoWORF915P |
| 4460 | replication protein for prophage | |||
| 10460 | DMT superfamily transporter inner | |||
| 10465 | V | V.SsoSE61DcmP (100% identity) | V.EcoWDcmP | |
| 10470 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoWDcmP |
| 10475 | hydrolase | |||
| 12585 | 58 aa hypothetical protein | |||
| 12590 | M | M.SflN97ORF15810P (100% identity) | GATC | M.EcoWORF2567P |
| 12595 | 148 aa hypothetical protein | |||
| 17260 | global DNA-binding transcriptional dual | |||
| 17265 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoWORF3528P |
| 17270 | 59 aa hypothetical protein | |||
| 17785 | ribulose-phosphate 3-epimerase | |||
| 17790 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoWDamP |
| 17795 | cell division protein DamX | |||
| 20640 | 30 aa hypothetical protein | |||
| 20645 | M | M.EcosE2ORF21575P (100% identity) | GGCC | M.EcoWORF4234P |
| 20650 | 345 aa hypothetical protein | |||
| plasmid pRK1 | ||||
| 23910 | 308 aa hypothetical protein | |||
| 23915 | M | M.Sso8ORF23800P (100% identity) | M.EcoWORF111P | |
| 23920 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22705 | 128 aa hypothetical protein | |||
| 22710 | R | EcohubtMcrCP (100% identity) | EcoWMcrCP | |
| 22715 | R | SflN101McrBP (100% identity) | EcoWMcrBP | |
| 22720 | restriction endonuclease | |||