Streptococcus pneumoniae ST556 |
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Putative Streptococcus pneumoniae ST556 RM systems
Ref: Chen,H. et al. PLoS ONE 3 (8), E2950 (2008)
REBASE ref # 14610
Complete sequence: 2,150,813 bp
GenBank #: CP003357
REBASE acronym: Spn556
Org_num: 8638
All begin MYY_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2550 | cell envelope | |||
| 2555 | S | S5.SpnRMV7ORF2158P (100% identity) | CACNNNNNNNCTG | S3.Spn556IIP |
| 2560 | integrase | |||
| 2565 | S | S2.Spnd6c6ORF465P (100% identity) | S2.Spn556IIP | |
| 570 | S | S2.SpnTORF544P (100% identity) | CRAANNNNNNNNCTT | S1.Spn556II |
| 571 | M | M.SpnTORF544P (100% identity) | CRAANNNNNNNNCTT | M.Spn556II |
| 572 | R | SpnTORF544P (100% identity) | CRAANNNNNNNNCTT | Spn556IIP |
| 573 | 42 aa hypothetical protein | |||
| 1305 | chlorohydrolase | |||
| 1306 | R | SpnTORF1314P (100% identity) | TGANNNNNNNTATC | Spn556IIIP |
| 1307 | S | S.SpnTORF1314AP (100% identity) | S2.Spn556IIIP | |
| 1308 | integrase | |||
| 1309 | prophage maintenance system killer protein (DOC: | |||
| 1310 | AbrB family transcriptional regulator | |||
| 1311 | S | S.SpnTORF1314BP (100% identity) | TGANNNNNNNTATC | S1.Spn556III |
| 1312 | M | M.SpnsD39dORF3010P (100% identity) | TGANNNNNNNTATC | M.Spn556III |
| 1313 | 41 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 62 | single-stranded DNA-binding protein | |||
| 63 | M | M.Spn225994ORF9120P (97% identity) | M.Spn556ORF63P | |
| 2235 | 67 aa hypothetical protein | |||
| 2715 | pseudogene | |||
| 859 | M | M.Spns521III (100% identity) | TCTAGA | M.Spn556I |
| ??? | R | SpnTORF843P (100% identity) | TCTAGA | Spn556IP |
| 862 | protease | |||
| 1744 | dpnD | |||
| 1745 | R | SpnsD39dORF3910P (100% identity) | GATC | Spn556ORF1745P |
| 1746 | thioesterase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 988 | translation factor | |||
| 989 | R | SpnZGXMcrBP (100% identity) | Spn556McrBP | |
| 990 | R | SpnTMcrCP (99% identity) | Spn556McrCP | |
| 991 | guanosine 5-monophosphate oxidoreductase | |||