Salmonella enterica subsp. enterica serovar Urbana R8-2977 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Urbana R8-2977 RM systems
Ref: den Bakker,H.C. et al. BMC Genomics 12, 425 (2011)
REBASE ref # 13961
GenBank #: AFCW00000000
REBASE acronym: Sen2977
Org_num: 8454
All begin LTSEURB_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6503 | Phage integrase | |||
| ??? | S | 163 aa hypothetical protein | S.Sen2977ORF6504P | |
| ??? | M | M.SenSmo02ORF2495P (100% identity) | M.Sen2977ORF6504P | |
| ??? | 237 aa hypothetical protein | |||
| 6505 | R | SenSmo02ORF2465P (100% identity) | Sen2977ORF6504P | |
| 6506 | Protein of unknown function DUF262 family | |||
| 6507 | 477 aa Hypothetical protein DUF262 | |||
| 6508 | S | S1.SenSmo02ORF2465P (99% identity) | S.Sen2977ORF6509P | |
| ??? | M | M1.SenSmo02ORF2465P (100% identity) | M.Sen2977ORF6509P | |
| 6510 | YfjZ toxin protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 557 | 489 aa hypothetical protein | |||
| 558 | M | M.Sen9872IV (93% identity) | CTTAAG | M.Sen2977ORF558P |
| 559 | R | Sen9872IVP (100% identity) | CTTAAG | Sen2977ORF558P |
| 1669 | metal-dependent phosphohydrolase | |||
| 1670 | M | M.SenST203DcmP (100% identity) | CCWGG | M.Sen2977DcmP |
| 1671 | V | V.StyUK1DcmP (92% identity) | V.Sen2977DcmP | |
| 1672 | Permease of the drug/metabolite transporter DMT | |||
| 1731 | Zinc-finger containing protein | |||
| 1732 | M | M.SenS224ORF5510P (100% identity) | GATC | M.Sen2977ORF1732P |
| 1733 | pseudogene | |||
| 2911 | 41 aa hypothetical protein | |||
| 2912 | M | M.SenK1674ORF5495P (100% identity) | M.Sen2977ORF2912P | |
| 2913 | 41 aa hypothetical protein | |||
| 3327 | M | M.Cbr1C01ORF8150P (90% identity) | GATC | M.Sen2977ORF3327P |
| 3328 | 43 aa hypothetical protein | |||
| 5164 | DNA-binding protein Fis | |||
| 5165 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen2977ORF5165P |
| 5166 | periplasmic protein | |||
| 6658 | M | M.Sens8810ORF24625P (100% identity) | M.Sen2977ORF6658P | |
| 6659 | cytoplasmic protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 600 | M | Type 3 restriction-modification system | M.Sen2977ORF600P | |
| 601 | M | Type 3 restriction-modification system | M.Sen2977ORF601P | |
| 602 | R | Sens30601ORF17060P (100% identity) | Sen2977ORF601P | |
| 603 | cytoplasmic protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6511 | YpjF antitoxin | |||
| 6512 | R | Sen703MrrP (93% identity) | Sen2977MrrP | |
| 6513 | R | Sen703Mrr2P (100% identity) | Sen2977Mrr2P | |
| 6514 | HNH nuclease | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5292 | Ribulose-phosphate | |||
| ??? | M | M.SenRM079Dam3P (100% identity) | GATC | M.Sen2977ORF5293P |