Paracoccus denitrificans PD1222 |
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Putative Paracoccus denitrificans PD1222 RM systems
Ref: Copeland,A. et al. unpublished
REBASE ref # 9829
| Sequence length: | GenBank #: | |
| chromosome 1: | 2,852,282 bp | CP000489 (NC_008686) |
| chromosome 2: | 1,730,097 bp | CP000490 (NC_008687) |
REBASE acronym: Pde1222
Org_num: 4398
All begin Pden_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 119 | 138 aa conserved hypothetical protein | |||
| 120 | M | M.Pde3ORF10130P (100% identity) | M.Pde1222ORF120P | |
| 121 | 96 aa hypothetical protein | |||
| 260 | 91 aa hypothetical protein | |||
| 261 | M | M1.PdeDYTN1ORF2030P (100% identity) | M1.Pde1222ORF261P | |
| 262 | 193 aa conserved hypothetical protein | |||
| 263 | M | M2.PdeDYTN1ORF2030P (100% identity) | M2.Pde1222ORF261P | |
| 264 | 98 aa conserved hypothetical protein | |||
| 340 | 139 aa hypothetical protein | |||
| 341 | M | M.PdeDYTN1ORF2445P (100% identity) | M.Pde1222ORF341P | |
| 342 | DNA polymerase III beta subunit family protein | |||
| 968 | bacteriophage hypothetical protein | |||
| 969 | M | M.PdeDYTN1ORF5670P (100% identity) | M.Pde1222ORF969P | |
| 970 | DNA polymerase III beta subunit family protein | |||
| 1524 | chromosome segregation SMC protein | |||
| 1525 | RM | PdeDYTN1ORF8440P (100% identity) | Pde1222ORF1525P | |
| 1526 | helicase domain protein | |||
| 2060 | HNH endonuclease | |||
| 2061 | M | M1.PdeDYTN1ORF11245P (100% identity) | M.Pde1222ORF2061P | |
| 2062 | V | V.PdeDYTN1ORF11245P (100% identity) | V.Pde1222ORF2061P | |
| 2063 | 163 aa conserved hypothetical phage terminase large | |||
| 2067 | 74 aa conserved hypothetical protein | |||
| 2068 | M | M2.PdeDYTN1ORF11245P (97% identity) | M.Pde1222ORF2068P | |
| 2069 | HNH endonuclease | |||
| 2100 | 373 aa conserved hypothetical protein | |||
| 2101 | M | M.PdeR1ORF2250P (100% identity) | GANTC | M.Pde1222ORF2101P |
| 2102 | RNase HII | |||
| chromosome 2 | ||||
| 3163 | 138 aa conserved hypothetical protein | |||
| 3164 | M | M.Pde3ORF22060P (100% identity) | M.Pde1222ORF3164P | |
| 3165 | 100 aa hypothetical protein | |||
| 3181 | 162 aa conserved hypothetical protein | |||
| 3182 | M | M.PdeDYTN1ORF16260P (100% identity) | YGGCCR | M.Pde1222ORF3182P |
| 3183 | conjugation peptidase TraF, Serine peptidase, | |||
| 3356 | 138 aa conserved hypothetical protein | |||
| 3357 | M | M.PdeDYTN1ORF17125P (100% identity) | M.Pde1222ORF3357P | |
| 3358 | 96 aa hypothetical protein | |||
| 3371 | 166 aa conserved hypothetical protein | |||
| 3372 | M | M.PdeDYTN1ORF17200P (100% identity) | YGGCCR | M.Pde1222ORF3372P |
| 3373 | conjugation peptidase TraF, Serine peptidase, | |||
| 3836 | 107 aa hypothetical protein | |||
| 3837 | C | C.PdeDYTN1ORF19635P (100% identity) | C.Pde1222ORF3838P | |
| ??? | M | M.Pde19367ORF19545P (100% identity) | RGATCY | M.Pde1222ORF3838P |
| 3839 | 156 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 2 | ||||
| 3323 | 196 aa hypothetical protein | |||
| 3324 | R | type III restriction enzyme, res subunit | CTGATG | Pde1222ORF3324P |
| 3325 | 763 aa conserved hypothetical protein | |||