Salmonella enterica subsp. enterica serovar Dublin 3246 |
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Putative Salmonella enterica subsp. enterica serovar Dublin 3246 RM systems
Ref: Stevens,M.P. et al. unpublished
REBASE ref # 12813
Complete sequence: 4,842,911 bp
GenBank #: CM001151
REBASE acronym: SenSD
Org_num: 5967
All begin SD3246_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4783 | transporter | |||
| 4784 | R | Ssp3CORF11555P (99% identity) | GGYANNNNNNTCG | SenSDORF4786P |
| 4785 | S | S1.Ssp3CORF11555P (100% identity) | GGYANNNNNNTCG | S.SenSDORF4786P |
| 4786 | M | M.StySBLI (100% identity) | GGYANNNNNNTCG | M.SenSDORF4786P |
| 4787 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1059 | 174 aa Conserved hypothetical bacteriophage protein | |||
| 1060 | M | M.Ssp3CORF17125P (100% identity) | M.SenSDORF1060P | |
| 1061 | Eaa1 | |||
| 1217 | modification methylase EcoRII | |||
| 1218 | V | V.StyUK1DcmP (100% identity) | V.SenSDDcmP | |
| 1219 | carboxylate/amino acid/amine transporter | |||
| 2212 | holiday-junction resolvase | |||
| 2213 | M | M.Ssp3CORF22825P (100% identity) | GATC | M.SenSDORF2213P |
| 2214 | Sb43 | |||
| 2227 | 245 aa hypothetical protein | |||
| 2228 | M | M.Ssp3CORF22905P (91% identity) | M.SenSDORF2228P | |
| 2229 | Eaa1 | |||
| 2958 | replication endonuclease from | |||
| 2959 | M | M.Ssp8103ORF5415P (100% identity) | GATC | M.SenSDORF2959P |
| 2960 | Zinc finger, DksA/TraR C4-type domain containing | |||
| 3629 | DNA-binding protein Fis | |||
| 3630 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSDORF3626P |
| 3631 | periplasmic protein | |||
| 3730 | ribulose-phosphate 3-epimerase | |||
| 3731 | M | M.StyTDamP (100% identity) | GATC | M.SenSDDamP |
| 3732 | protein DamX | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 378 | major facilitator superfamily MFS_1 | |||
| 379 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSDORF379P |
| 380 | R | SenOU1113ORF1221P (100% identity) | CAGAG | SenSDORF379P |
| 381 | cytochrome BD2 subunit I | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4786 | type I restriction-modification system, M | |||
| 4787 | R | SenSL913MrrP (100% identity) | SenSDMrrP | |
| 4788 | 44 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1216 | metal dependent phosphohydrolase | |||
| 1217 | M | M.Ssp3CDcmP (100% identity) | CCWGG | M.SenSDORF1217P |
| 1218 | DNA mismatch endonuclease | |||